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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95939 (5 seq.)
>WENV181407701
OGCH01000024
[OGCH] hot springs metagenome; hot springs
77142
77229
+
Leu
TAA
[ENA]
¢þ
>WENV181408184
OGCH01000910
[OGCH] hot springs metagenome; hot springs
5027
5114
+
Leu
TAA
[ENA]
¢þ
>W09113489
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
66860
66773
-
Leu
TAA
[ENA]
¡û
>C09104276
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
726813
726900
+
Leu
TAA
[Ensembl]
¡û
>C09104322
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
897709
897796
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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