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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = TGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.528490 (5 seq.)
>W09113481
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
172835
172760
-
Ala
TGC
[ENA]
¡û
>W09113483
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
171097
171022
-
Ala
TGC
[ENA]
¡û
>W09113485
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
169507
169432
-
Ala
TGC
[ENA]
¡û
>W09113487
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
167790
167715
-
Ala
TGC
[ENA]
¡û
>C09104362
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1244053
1243978
-
Ala
TGC
[Ensembl]
¡û
Identical group No.568625 (2 seq.)
>WENV181408936
OGCH01024970
[OGCH] hot springs metagenome; hot springs
693
618
-
Ala
TGC
[ENA]
¢þ
>C09104314
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1077165
1077090
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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