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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527805 (6 seq.)
>WENV180012671
FMSI01012686
[FMSI] soil metagenome; Soil
2095
2170
+
Gln
TTG
[ENA]
¢þ
>WENV181407828
OGCH01000103
[OGCH] hot springs metagenome; hot springs
54080
54005
-
Gln
TTG
[ENA]
¢þ
>WENV181408061
OGCH01000470
[OGCH] hot springs metagenome; hot springs
18628
18553
-
Gln
TTG
[ENA]
¢þ
>W09113488
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
162363
162288
-
Gln
TTG
[ENA]
¡û
>C09104275
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
631072
631147
+
Gln
TTG
[Ensembl]
¡û
>C09104321
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
803043
803118
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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