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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527791 (5 seq.)
>WENV181407817
OGCH01000096
[OGCH] hot springs metagenome; hot springs
58953
59027
+
Lys
TTT
[ENA]
¢þ
>WENV181407882
OGCH01000176
[OGCH] hot springs metagenome; hot springs
41169
41243
+
Lys
TTT
[ENA]
¢þ
>W09113518
ABYR01000005
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
55918
55993
+
Lys
TTT
[ENA]
¡û
>C09104293
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1137933
1138008
+
Lys
TTT
[Ensembl]
¡û
>C09104341
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1301230
1301305
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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