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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CCG
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361944 (1 seq.)
>W1711413193
MGVN01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
4716
4790
+
Arg
CCG
[ENA]
¡û
Identical group No.539209 (6 seq.)
>W1711412688
MGUY01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
81
154
+
Arg
CCG
[ENA]
¡û
>W1711412727
MGUZ01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
104680
104607
-
Arg
CCG
[ENA]
¡û
>W1711412914
MGVE01000008
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
213999
214072
+
Arg
CCG
[ENA]
¡û
>W1711413074
MGVJ01000067
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
12635
12562
-
Arg
CCG
[ENA]
¡û
>W1711413116
MGVK01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
1400
1327
-
Arg
CCG
[ENA]
¡û
>W1711413157
MGVL01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
104613
104540
-
Arg
CCG
[ENA]
¡û
Identical group No.574736 (2 seq.)
>W1711412947
MGVF01000022
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
19552
19478
-
Arg
CCG
[ENA]
¡û
>W1711413256
MGVO01000033
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
474
548
+
Arg
CCG
[ENA]
¡û
Identical group No.628916 (1 seq.)
>W1711583340
MNXB01000053
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
435
509
+
Arg
CCG
[ENA]
¡û
Identical group No.654676 (18 seq.)
>W1711411943
MGTS01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
10343
10270
-
Arg
CCG
[ENA]
¡û
>W1711412001
MGTT01000020
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
66055
65981
-
Arg
CCG
[ENA]
¡û
>W1711412033
MGTU01000009
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
45971
46042
+
Arg
CCG
[ENA]
¡û
>W1711412132
MGTW01000072
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
6571
6646
+
Arg
CCG
[ENA]
¡û
>W1711412253
MGTZ01000059
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
11189
11264
+
Arg
CCG
[ENA]
¡û
>W1711412273
MGUA01000022
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
48698
48772
+
Arg
CCG
[ENA]
¡û
>W1711412336
MGUC01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
65962
65888
-
Arg
CCG
[ENA]
¡û
>W1711412426
MGUE01000050
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
8217
8288
+
Arg
CCG
[ENA]
¡û
>W1711412572
MGUI01000065
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
88852
88778
-
Arg
CCG
[ENA]
¡û
>W1711412582
MGUJ01000080
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
25763
25836
+
Arg
CCG
[ENA]
¡û
>W1711412636
MGUK01000095
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
53444
53518
+
Arg
CCG
[ENA]
¡û
>W1711412785
MGVA01000044
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
19442
19516
+
Arg
CCG
[ENA]
¡û
>W1711412823
MGVB01000129
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
1876
1802
-
Arg
CCG
[ENA]
¡û
>W1711412977
MGVG01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
69511
69585
+
Arg
CCG
[ENA]
¡û
>W1711413016
MGVH01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
29574
29500
-
Arg
CCG
[ENA]
¡û
>W1711413292
MGVP01000691
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
3715
3789
+
Arg
CCG
[ENA]
¡û
>W1711581900
MNUR01000085
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
73913
73839
-
Arg
CCG
[ENA]
¡û
>WENV181230994
OFEK01006884
[OFEK] activated sludge metagenome; Anaerobic digester
3991
4062
+
Arg
CCG
[ENA]
¢þ
Identical group No.656689 (3 seq.)
>W1711412175
MGTX01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
26850
26924
+
Arg
CCG
[ENA]
¡û
>W1711412527
MGUH01000122
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
11814
11740
-
Arg
CCG
[ENA]
¡û
>WENV180032615
FTKC01155916
[FTKC] metagenome; soil
93
19
-
Arg
CCG
[ENA]
¢þ
Identical group No.656773 (2 seq.)
>W1711412087
MGTV01000033
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
17437
17366
-
Arg
CCG
[ENA]
¡û
>W1711412477
MGUG01000032
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
21327
21401
+
Arg
CCG
[ENA]
¡û
Identical group No.656798 (1 seq.)
>W1711412844
MGVC01000035
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
12719
12790
+
Arg
CCG
[ENA]
¡û
Identical group No.656803 (2 seq.)
>W1711413320
MGVQ01000088
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
6158
6085
-
Arg
CCG
[ENA]
¡û
>W1711413396
MGVT01000025
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
6768
6841
+
Arg
CCG
[ENA]
¡û
Identical group No.660451 (3 seq.)
>C08011113
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
126338
126411
+
Arg
CCG
-
¡û
>C181002070
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
124730
124803
+
Arg
CCG
-
¡û
>ENV000844
AP009510
Environmental sample from ENV division of INSDC
126338
126414
+
Arg
CCG
[ENA]
Identical group No.670921 (4 seq.)
>W1711411938
MGTR01000141
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
11253
11182
-
Arg
CCG
[ENA]
¡û
>W1910727578
MGUN01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
73519
73448
-
Arg
CCG
[ENA]
¡û
>W1910727823
MGUU01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
73510
73439
-
Arg
CCG
[ENA]
¡û
>W1910727895
MGUW01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
73522
73451
-
Arg
CCG
[ENA]
¡û
Identical group No.686903 (1 seq.)
>W1711412210
MGTY01000110
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
62084
62155
+
Arg
CCG
[ENA]
¡û
Identical group No.686940 (1 seq.)
>W1711413054
MGVI01000340
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
681
752
+
Arg
CCG
[ENA]
¡û
Identical group No.712134 (1 seq.)
>W1910727937
MGUX01000167
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
28419
28347
-
Arg
CCG
[ENA]
¡û
Identical group No.713534 (1 seq.)
>W1711412887
MGVD01000081
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
7541
7469
-
Arg
CCG
[ENA]
¡û
Identical group No.713791 (2 seq.)
>W1710917344
LNVX01000553
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
19813
19886
+
Arg
CCG
[ENA]
¡û
>WENV170715449
LQAB01000990
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1323
1250
-
Arg
CCG
[ENA]
¢þ
Identical group No.713830 (3 seq.)
>W1710917256
LNVX01000213
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
10384
10457
+
Arg
CCG
[ENA]
¡û
>W1710917296
LNVX01000297
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1742
1815
+
Arg
CCG
[ENA]
¡û
>WENV170715852
LQAB01017591
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
14694
14621
-
Arg
CCG
[ENA]
¢þ
Identical group No.713835 (2 seq.)
>W1710917298
LNVX01000304
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2121
2194
+
Arg
CCG
[ENA]
¡û
>WENV170715941
LQAB01021396
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1620
1547
-
Arg
CCG
[ENA]
¢þ
Identical group No.721022 (6 seq.)
>W1711412638
MGUL01000002
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1547
1473
-
Arg
CCG
[ENA]
¡û
>W1711413328
MGVR01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
1721
1647
-
Arg
CCG
[ENA]
¡û
>WENV180255651
OBEQ010743198
[OBEQ] groundwater metagenome; groundwater
769
698
-
Arg
CCG
[ENA]
¢þ
>WENV180261575
OBEQ011307749
[OBEQ] groundwater metagenome; groundwater
285
356
+
Arg
CCG
[ENA]
¢þ
>WENV180267024
OBEQ011807503
[OBEQ] groundwater metagenome; groundwater
938
1009
+
Arg
CCG
[ENA]
¢þ
>WENV183687049
ORMF011088814
[ORMF] groundwater metagenome; groundwater
404
330
-
Arg
CCG
[ENA]
¢þ
Identical group No.732249 (2 seq.)
>W1910727540
MGUM01000055
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
10163
10238
+
Arg
CCG
[ENA]
¡û
>W1910727789
MGUT01000031
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
8800
8875
+
Arg
CCG
[ENA]
¡û
Identical group No.737260 (6 seq.)
>W1712038701
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
33639
33713
+
Arg
CCG
[ENA]
¡û
>WENV180231168
OBCN01002494
[OBCN] human gut metagenome; human gut
379
450
+
Arg
CCG
[ENA]
¢þ
>WENV181648102
OGNQ01004082
[OGNQ] metagenome; Human gut stool
1015
944
-
Arg
CCG
[ENA]
¢þ
>WENV183640091
OQVL01001142
[OQVL] human gut metagenome; human gut
11694
11623
-
Arg
CCG
[ENA]
¢þ
>WENV183643034
OQVO01000776
[OQVO] human gut metagenome; human gut
2344
2273
-
Arg
CCG
[ENA]
¢þ
>WENV183653934
OQWA01003163
[OQWA] human gut metagenome; human gut
4664
4593
-
Arg
CCG
[ENA]
¢þ
Identical group No.738765 (1 seq.)
>W1910727701
MGUQ01000082
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
6151
6078
-
Arg
CCG
[ENA]
¡û
Identical group No.751132 (1 seq.)
>W1910727733
MGUR01000049
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
8347
8420
+
Arg
CCG
[ENA]
¡û
Identical group No.751516 (1 seq.)
>C151052999
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
143495
143566
+
Arg
CCG
[Ensembl]
¡û
Identical group No.752085 (1 seq.)
>W1711413183
MGVM01000138
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
4397
4468
+
Arg
CCG
[ENA]
¡û
Identical group No.752188 (1 seq.)
>W1711581939
MNUS01000133
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
275
349
+
Arg
CCG
[ENA]
¡û
Identical group No.770642 (1 seq.)
>W1910727777
MGUS01000089
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
12381
12308
-
Arg
CCG
[ENA]
¡û
Identical group No.779134 (1 seq.)
>W1910727611
MGUO01000121
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
3820
3891
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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