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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CCT
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254794 (2 seq.)
>W1710917350
LNVX01000575
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
924
848
-
Arg
CCT
[ENA]
¡û
>WENV170715786
LQAB01015336
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
888
812
-
Arg
CCT
[ENA]
¢þ
Identical group No.266538 (1 seq.)
>W1711583326
MNXB01000005
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
35010
34936
-
Arg
CCT
[ENA]
¡û
Identical group No.276811 (3 seq.)
>W1711412842
MGVC01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
41232
41307
+
Arg
CCT
[ENA]
¡û
>W1711412878
MGVD01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
6102
6177
+
Arg
CCT
[ENA]
¡û
>WENV170609550
FUWD011427916
[FUWD] metagenome; unknown
152
79
-
Arg
CCT
[ENA]
¢þ
Identical group No.282869 (2 seq.)
>C08004673
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
857410
857337
-
Arg
CCT
[Ensembl]
¡û
>W09107484
ABIQ01000003
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
12936
12860
-
Arg
CCT
[ENA]
¡û
Identical group No.282937 (4 seq.)
>C08011142
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
743933
743858
-
Arg
CCT
-
¡û
>WENV170715860
LQAB01017957
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
280
355
+
Arg
CCT
[ENA]
¢þ
>C181002099
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
734334
734259
-
Arg
CCT
-
¡û
>ENV000866
AP009510
Environmental sample from ENV division of INSDC
743933
743855
-
Arg
CCT
[ENA]
Identical group No.298296 (4 seq.)
>W1711411923
MGTR01000065
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
1950
1875
-
Arg
CCT
[ENA]
¡û
>W1910727590
MGUN01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
127958
128033
+
Arg
CCT
[ENA]
¡û
>W1910727840
MGUU01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
127955
128030
+
Arg
CCT
[ENA]
¡û
>W1910727889
MGUW01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
4715
4640
-
Arg
CCT
[ENA]
¡û
Identical group No.350335 (5 seq.)
>W1711412687
MGUY01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
2834
2760
-
Arg
CCT
[ENA]
¡û
>W1711412743
MGUZ01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
59773
59699
-
Arg
CCT
[ENA]
¡û
>W1711412932
MGVE01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
59766
59692
-
Arg
CCT
[ENA]
¡û
>W1711413109
MGVK01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
26740
26814
+
Arg
CCT
[ENA]
¡û
>W1711413154
MGVL01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
59671
59597
-
Arg
CCT
[ENA]
¡û
Identical group No.361955 (1 seq.)
>W1711413238
MGVN01000223
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
2540
2464
-
Arg
CCT
[ENA]
¡û
Identical group No.373141 (1 seq.)
>W1711412676
MGUL01000138
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1770
1694
-
Arg
CCT
[ENA]
¡û
Identical group No.388717 (2 seq.)
>W1910727551
MGUM01000081
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
9709
9635
-
Arg
CCT
[ENA]
¡û
>W1910727808
MGUT01000076
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
24207
24133
-
Arg
CCT
[ENA]
¡û
Identical group No.395885 (5 seq.)
>W1712038743
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
944
871
-
Arg
CCT
[ENA]
¡û
>WENV180231383
OBCN01017479
[OBCN] human gut metagenome; human gut
589
662
+
Arg
CCT
[ENA]
¢þ
>WENV181647441
OGNQ01000015
[OGNQ] metagenome; Human gut stool
84627
84554
-
Arg
CCT
[ENA]
¢þ
>WENV183642985
OQVO01000421
[OQVO] human gut metagenome; human gut
8242
8169
-
Arg
CCT
[ENA]
¢þ
>WENV183654169
OQWA01013447
[OQWA] human gut metagenome; human gut
959
1032
+
Arg
CCT
[ENA]
¢þ
Identical group No.397837 (1 seq.)
>W1910727700
MGUQ01000080
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
6747
6821
+
Arg
CCT
[ENA]
¡û
Identical group No.415187 (1 seq.)
>C151053013
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
530052
530126
+
Arg
CCT
[Ensembl]
¡û
Identical group No.416308 (1 seq.)
>W1711413185
MGVM01000178
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
4164
4091
-
Arg
CCT
[ENA]
¡û
Identical group No.416310 (1 seq.)
>W1711413259
MGVO01000058
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
89
164
+
Arg
CCT
[ENA]
¡û
Identical group No.423190 (1 seq.)
>W1710917326
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
16830
16755
-
Arg
CCT
[ENA]
¡û
Identical group No.423327 (1 seq.)
>W1711413384
MGVS01000077
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
2705
2780
+
Arg
CCT
[ENA]
¡û
Identical group No.429791 (1 seq.)
>W1711413311
MGVQ01000056
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
4886
4959
+
Arg
CCT
[ENA]
¡û
Identical group No.432299 (2 seq.)
>WENV180250712
OBEQ010306429
[OBEQ] groundwater metagenome; groundwater
571
497
-
Arg
CCT
[ENA]
¢þ
>W1910727766
MGUS01000054
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
3721
3796
+
Arg
CCT
[ENA]
¡û
Identical group No.656681 (3 seq.)
>W1711412152
MGTX01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
128411
128482
+
Arg
CCT
[ENA]
¡û
>W1711412506
MGUH01000056
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
26287
26216
-
Arg
CCT
[ENA]
¡û
>W1711412674
MGUL01000132
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
7788
7716
-
Arg
CCT
[ENA]
¡û
Identical group No.656765 (7 seq.)
>W1711412122
MGTW01000052
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
32600
32528
-
Arg
CCT
[ENA]
¡û
>W1711412251
MGTZ01000057
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
33064
32992
-
Arg
CCT
[ENA]
¡û
>W1711412455
MGUG01000007
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
109645
109717
+
Arg
CCT
[ENA]
¡û
>W1711412561
MGUI01000049
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
35346
35274
-
Arg
CCT
[ENA]
¡û
>W1711412627
MGUK01000075
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
5038
4964
-
Arg
CCT
[ENA]
¡û
>W1910727655
MGUP01000777
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
1429
1503
+
Arg
CCT
[ENA]
¡û
>W1910727870
MGUV01000163
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
5735
5661
-
Arg
CCT
[ENA]
¡û
Identical group No.656787 (9 seq.)
>W1711411947
MGTS01000014
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
54252
54180
-
Arg
CCT
[ENA]
¡û
>W1711412014
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
158242
158168
-
Arg
CCT
[ENA]
¡û
>W1711412023
MGTU01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
29065
29139
+
Arg
CCT
[ENA]
¡û
>W1711412341
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
77602
77676
+
Arg
CCT
[ENA]
¡û
>W1711412387
MGUD01000028
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
30123
30049
-
Arg
CCT
[ENA]
¡û
>W1711412424
MGUE01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
17576
17650
+
Arg
CCT
[ENA]
¡û
>W1711412778
MGVA01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
15572
15646
+
Arg
CCT
[ENA]
¡û
>W1711412990
MGVG01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
15585
15659
+
Arg
CCT
[ENA]
¡û
>W1711581880
MNUR01000041
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
803
877
+
Arg
CCT
[ENA]
¡û
Identical group No.686898 (1 seq.)
>W1711412195
MGTY01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
69315
69244
-
Arg
CCT
[ENA]
¡û
Identical group No.686935 (3 seq.)
>W1711412257
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
16794
16868
+
Arg
CCT
[ENA]
¡û
>W1711412805
MGVB01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
5866
5940
+
Arg
CCT
[ENA]
¡û
>W1711413035
MGVH01000090
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
11463
11537
+
Arg
CCT
[ENA]
¡û
Identical group No.686938 (2 seq.)
>W1711413049
MGVI01000146
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
618
689
+
Arg
CCT
[ENA]
¡û
>W1910727646
MGUP01000405
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
183
254
+
Arg
CCT
[ENA]
¡û
Identical group No.727685 (1 seq.)
>W1711413343
MGVR01000175
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
6523
6597
+
Arg
CCT
[ENA]
¡û
Identical group No.752190 (1 seq.)
>W1711581944
MNUS01000156
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
3338
3267
-
Arg
CCT
[ENA]
¡û
Identical group No.761686 (1 seq.)
>W1711412079
MGTV01000016
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
1136
1207
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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