This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CGA
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18247 (1 seq.)
>W1711581915
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
5297
5389
+
Ser
CGA
[ENA]
¡û
Identical group No.21307 (4 seq.)
>W1711411931
MGTR01000123
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
509
418
-
Ser
CGA
[ENA]
¡û
>W1910727591
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
156
247
+
Ser
CGA
[ENA]
¡û
>W1910727830
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
194
285
+
Ser
CGA
[ENA]
¡û
>W1910727904
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
197
288
+
Ser
CGA
[ENA]
¡û
Identical group No.24876 (1 seq.)
>W1711413201
MGVN01000065
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
6367
6456
+
Ser
CGA
[ENA]
¡û
Identical group No.28999 (1 seq.)
>W1711583359
MNXB01000128
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
8588
8676
+
Ser
CGA
[ENA]
¡û
Identical group No.30782 (1 seq.)
>W1711413423
MGVT01000123
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
10866
10955
+
Ser
CGA
[ENA]
¡û
Identical group No.31282 (8 seq.)
>C08011143
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
714382
714294
-
Ser
CGA
-
¡û
>C08011144
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
708515
708427
-
Ser
CGA
-
¡û
>C181002081
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
579524
579612
+
Ser
CGA
-
¡û
>C181002082
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
585112
585200
+
Ser
CGA
-
¡û
>ENV000094
AB360900
Environmental sample from ENV division of INSDC
356
448
+
Ser
CGA
[ENA]
>ENV000095
AB360901
Environmental sample from ENV division of INSDC
356
448
+
Ser
CGA
[ENA]
>ENV000864
AP009510
Environmental sample from ENV division of INSDC
708516
708424
-
Ser
CGA
[ENA]
>ENV000865
AP009510
Environmental sample from ENV division of INSDC
714383
714291
-
Ser
CGA
[ENA]
Identical group No.38103 (2 seq.)
>W1710917267
LNVX01000227
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
45195
45106
-
Ser
CGA
[ENA]
¡û
>WENV170715804
LQAB01015739
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
16278
16189
-
Ser
CGA
[ENA]
¢þ
Identical group No.38105 (2 seq.)
>W1710917247
LNVX01000107
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
705
615
-
Ser
CGA
[ENA]
¡û
>WENV170715936
LQAB01021091
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
668
578
-
Ser
CGA
[ENA]
¢þ
Identical group No.42709 (1 seq.)
>W1711413269
MGVO01000099
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
6809
6722
-
Ser
CGA
[ENA]
¡û
Identical group No.45619 (1 seq.)
>W1910727603
MGUO01000033
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
937
1027
+
Ser
CGA
[ENA]
¡û
Identical group No.46432 (2 seq.)
>W1711412165
MGTX01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
38810
38899
+
Ser
CGA
[ENA]
¡û
>W1711412500
MGUH01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
1574
1663
+
Ser
CGA
[ENA]
¡û
Identical group No.46454 (1 seq.)
>W1711412838
MGVC01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
50357
50268
-
Ser
CGA
[ENA]
¡û
Identical group No.58532 (1 seq.)
>W1711412882
MGVD01000068
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
14643
14731
+
Ser
CGA
[ENA]
¡û
Identical group No.60215 (2 seq.)
>W1711412667
MGUL01000107
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
683
772
+
Ser
CGA
[ENA]
¡û
>WENV183686710
ORMF011040079
[ORMF] groundwater metagenome; groundwater
469
381
-
Ser
CGA
[ENA]
¢þ
Identical group No.61559 (5 seq.)
>W1711412745
MGUZ01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
100761
100673
-
Ser
CGA
[ENA]
¡û
>W1711412904
MGVE01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
62838
62926
+
Ser
CGA
[ENA]
¡û
>W1711413067
MGVJ01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
6382
6294
-
Ser
CGA
[ENA]
¡û
>W1711413122
MGVK01000030
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
45802
45890
+
Ser
CGA
[ENA]
¡û
>W1711413129
MGVL01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
62830
62918
+
Ser
CGA
[ENA]
¡û
Identical group No.61561 (1 seq.)
>W1711413332
MGVR01000043
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
836
925
+
Ser
CGA
[ENA]
¡û
Identical group No.64067 (1 seq.)
>W1910727677
MGUQ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
6758
6845
+
Ser
CGA
[ENA]
¡û
Identical group No.66680 (1 seq.)
>W1910727716
MGUR01000009
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
46660
46748
+
Ser
CGA
[ENA]
¡û
Identical group No.66768 (1 seq.)
>C151053016
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1086106
1086195
+
Ser
CGA
[Ensembl]
¡û
Identical group No.67884 (1 seq.)
>W1711413378
MGVS01000069
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
12179
12265
+
Ser
CGA
[ENA]
¡û
Identical group No.68742 (1 seq.)
>W1910727792
MGUT01000040
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
2188
2274
+
Ser
CGA
[ENA]
¡û
Identical group No.70807 (1 seq.)
>W1910727776
MGUS01000084
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
6514
6603
+
Ser
CGA
[ENA]
¡û
Identical group No.87595 (10 seq.)
>W1711411942
MGTS01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
5683
5597
-
Ser
CGA
[ENA]
¡û
>W1711412006
MGTT01000026
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
3603
3517
-
Ser
CGA
[ENA]
¡û
>W1711412301
MGUB01000013
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
17077
17163
+
Ser
CGA
[ENA]
¡û
>W1711412351
MGUC01000024
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
1873
1787
-
Ser
CGA
[ENA]
¡û
>W1711412468
MGUG01000020
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
88869
88955
+
Ser
CGA
[ENA]
¡û
>W1711412607
MGUJ01000154
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
4946
5032
+
Ser
CGA
[ENA]
¡û
>W1711412788
MGVA01000059
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
89420
89334
-
Ser
CGA
[ENA]
¡û
>W1711412808
MGVB01000054
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
9163
9077
-
Ser
CGA
[ENA]
¡û
>W1711413002
MGVG01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
89459
89373
-
Ser
CGA
[ENA]
¡û
>W1711413039
MGVH01000106
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
2952
2866
-
Ser
CGA
[ENA]
¡û
Identical group No.88301 (2 seq.)
>C08004674
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
838254
838168
-
Ser
CGA
[Ensembl]
¡û
>W09107487
ABIQ01000005
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
2701
2787
+
Ser
CGA
[ENA]
¡û
Identical group No.92528 (8 seq.)
>W1712038702
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
50098
50184
+
Ser
CGA
[ENA]
¡û
>WENV180231361
OBCN01014231
[OBCN] human gut metagenome; human gut
302
388
+
Ser
CGA
[ENA]
¢þ
>WENV181647678
OGNQ01000344
[OGNQ] metagenome; Human gut stool
39313
39227
-
Ser
CGA
[ENA]
¢þ
>WENV182658776
OJML01000703
[OJML] human gut metagenome; feces
18909
18995
+
Ser
CGA
[ENA]
¢þ
>WENV183070812
OLIS01000780
[OLIS] human gut metagenome; feces
8505
8419
-
Ser
CGA
[ENA]
¢þ
>WENV183640086
OQVL01001109
[OQVL] human gut metagenome; human gut
8131
8045
-
Ser
CGA
[ENA]
¢þ
>WENV183643167
OQVO01002657
[OQVO] human gut metagenome; human gut
2719
2633
-
Ser
CGA
[ENA]
¢þ
>WENV183645296
OQVQ01003171
[OQVQ] human gut metagenome; human gut
1736
1650
-
Ser
CGA
[ENA]
¢þ
Identical group No.93120 (8 seq.)
>W1711412028
MGTU01000007
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
179
92
-
Ser
CGA
[ENA]
¡û
>W1711412114
MGTW01000036
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
108592
108679
+
Ser
CGA
[ENA]
¡û
>W1711412235
MGTZ01000038
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
70304
70391
+
Ser
CGA
[ENA]
¡û
>W1711412278
MGUA01000027
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
148066
148152
+
Ser
CGA
[ENA]
¡û
>W1711412399
MGUE01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
31945
31858
-
Ser
CGA
[ENA]
¡û
>W1711412557
MGUI01000044
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
27643
27557
-
Ser
CGA
[ENA]
¡û
>W1910727670
MGUP01001000
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
5025
5111
+
Ser
CGA
[ENA]
¡û
>W1910727862
MGUV01000103
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
3923
3837
-
Ser
CGA
[ENA]
¡û
Identical group No.93645 (1 seq.)
>W1711581885
MNUR01000058
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
260
174
-
Ser
CGA
[ENA]
¡û
Identical group No.110692 (1 seq.)
>W1711413294
MGVP01000780
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
5135
5049
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK