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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CGC
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458031 (6 seq.)
>W1711412162
MGTX01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
19036
18961
-
Ala
CGC
[ENA]
¡û
>W1711412531
MGUH01000135
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
9365
9290
-
Ala
CGC
[ENA]
¡û
>W1711412657
MGUL01000059
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
19079
19004
-
Ala
CGC
[ENA]
¡û
>W1711413354
MGVR01000405
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
2539
2464
-
Ala
CGC
[ENA]
¡û
>WENV180273076
OBEQ012446522
[OBEQ] groundwater metagenome; groundwater
378
451
+
Ala
CGC
[ENA]
¢þ
>WENV170609529
FUWD011425150
[FUWD] metagenome; unknown
205
130
-
Ala
CGC
[ENA]
¢þ
Identical group No.458173 (16 seq.)
>W1711411953
MGTS01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
10525
10450
-
Ala
CGC
[ENA]
¡û
>W1711412030
MGTU01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
257079
257004
-
Ala
CGC
[ENA]
¡û
>W1711412060
MGTV01000001
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
32927
32852
-
Ala
CGC
[ENA]
¡û
>W1711412131
MGTW01000070
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
26169
26094
-
Ala
CGC
[ENA]
¡û
>W1711412221
MGTZ01000012
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
26035
25960
-
Ala
CGC
[ENA]
¡û
>W1711412293
MGUA01000040
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
14271
14196
-
Ala
CGC
[ENA]
¡û
>W1711412297
MGUB01000005
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
5784
5859
+
Ala
CGC
[ENA]
¡û
>W1711412379
MGUD01000013
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
133235
133160
-
Ala
CGC
[ENA]
¡û
>W1711412391
MGUE01000004
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
24666
24591
-
Ala
CGC
[ENA]
¡û
>W1711412445
MGUF01000082
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
9479
9554
+
Ala
CGC
[ENA]
¡û
>W1711412478
MGUG01000037
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
17959
17884
-
Ala
CGC
[ENA]
¡û
>W1711412538
MGUI01000017
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
9214
9289
+
Ala
CGC
[ENA]
¡û
>W1711412585
MGUJ01000086
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
18
93
+
Ala
CGC
[ENA]
¡û
>W1711412608
MGUK01000007
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
85347
85272
-
Ala
CGC
[ENA]
¡û
>W1711581907
MNUR01000103
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
22028
21953
-
Ala
CGC
[ENA]
¡û
>W1910727644
MGUP01000300
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
1201
1276
+
Ala
CGC
[ENA]
¡û
Identical group No.458177 (4 seq.)
>W1711411988
MGTT01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
106837
106912
+
Ala
CGC
[ENA]
¡û
>W1711412365
MGUC01000033
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
139460
139535
+
Ala
CGC
[ENA]
¡û
>W1711412757
MGVA01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
20630
20702
+
Ala
CGC
[ENA]
¡û
>W1711412996
MGVG01000042
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
20633
20705
+
Ala
CGC
[ENA]
¡û
Identical group No.458184 (3 seq.)
>W1711412849
MGVC01000039
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
18838
18764
-
Ala
CGC
[ENA]
¡û
>W1711412884
MGVD01000073
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
77
3
-
Ala
CGC
[ENA]
¡û
>W1711413171
MGVM01000044
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
15400
15326
-
Ala
CGC
[ENA]
¡û
Identical group No.464703 (2 seq.)
>C08004672
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
877199
877127
-
Ala
CGC
[Ensembl]
¡û
>W09107483
ABIQ01000003
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
32728
32656
-
Ala
CGC
[ENA]
¡û
Identical group No.481758 (4 seq.)
>W1711411933
MGTR01000124
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
11157
11232
+
Ala
CGC
[ENA]
¡û
>W1910727562
MGUN01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
13470
13395
-
Ala
CGC
[ENA]
¡û
>W1910727847
MGUU01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
20166
20091
-
Ala
CGC
[ENA]
¡û
>W1910727875
MGUW01000005
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
13532
13457
-
Ala
CGC
[ENA]
¡û
Identical group No.496251 (5 seq.)
>WENV180259781
OBEQ011138496
[OBEQ] groundwater metagenome; groundwater
385
312
-
Ala
CGC
[ENA]
¢þ
>WENV181188647
OEOE01248924
[OEOE] activated sludge metagenome; Activated Sludge
87
161
+
Ala
CGC
[ENA]
¢þ
>WENV181189990
OEOF01378758
[OEOF] activated sludge metagenome; Activated Sludge
175
101
-
Ala
CGC
[ENA]
¢þ
>W1910727532
MGUM01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
18418
18490
+
Ala
CGC
[ENA]
¡û
>W1910727799
MGUT01000059
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
11451
11379
-
Ala
CGC
[ENA]
¡û
Identical group No.500890 (11 seq.)
>W1712038724
NFJD01000002
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
121637
121562
-
Ala
CGC
[ENA]
¡û
>WENV180231263
OBCN01005502
[OBCN] human gut metagenome; human gut
1514
1439
-
Ala
CGC
[ENA]
¢þ
>WENV181647571
OGNQ01000109
[OGNQ] metagenome; Human gut stool
55730
55805
+
Ala
CGC
[ENA]
¢þ
>WENV181691218
OGOZ01003707
[OGOZ] human gut metagenome; faeces
2715
2640
-
Ala
CGC
[ENA]
¢þ
>WENV182658406
OJML01000001
[OJML] human gut metagenome; feces
119368
119443
+
Ala
CGC
[ENA]
¢þ
>WENV183070540
OLIS01000022
[OLIS] human gut metagenome; feces
95696
95621
-
Ala
CGC
[ENA]
¢þ
>WENV183640874
OQVL01012750
[OQVL] human gut metagenome; human gut
2917
2842
-
Ala
CGC
[ENA]
¢þ
>WENV183643142
OQVO01002139
[OQVO] human gut metagenome; human gut
4629
4704
+
Ala
CGC
[ENA]
¢þ
>WENV183645432
OQVQ01006809
[OQVQ] human gut metagenome; human gut
1045
970
-
Ala
CGC
[ENA]
¢þ
>WENV183654172
OQWA01013487
[OQWA] human gut metagenome; human gut
516
591
+
Ala
CGC
[ENA]
¢þ
>WENV183657224
OQWI01004859
[OQWI] human gut metagenome; human gut
266
191
-
Ala
CGC
[ENA]
¢þ
Identical group No.508670 (1 seq.)
>W1711412186
MGTY01000027
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
3447
3372
-
Ala
CGC
[ENA]
¡û
Identical group No.529146 (1 seq.)
>W1711412578
MGUJ01000033
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
72
-1
-
Ala
CGC
[ENA]
¡û
Identical group No.552144 (1 seq.)
>W1711413244
MGVN01000249
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
16870
16798
-
Ala
CGC
[ENA]
¡û
Identical group No.574735 (4 seq.)
>W1711412747
MGUZ01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
92573
92499
-
Ala
CGC
[ENA]
¡û
>W1711412928
MGVE01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
66710
66636
-
Ala
CGC
[ENA]
¡û
>W1711413083
MGVJ01000099
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
6190
6116
-
Ala
CGC
[ENA]
¡û
>W1711413148
MGVL01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
66721
66647
-
Ala
CGC
[ENA]
¡û
Identical group No.592610 (1 seq.)
>W1910727702
MGUQ01000085
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
7810
7737
-
Ala
CGC
[ENA]
¡û
Identical group No.611619 (1 seq.)
>W1910727719
MGUR01000009
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
41503
41428
-
Ala
CGC
[ENA]
¡û
Identical group No.612186 (1 seq.)
>C151053027
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1164695
1164621
-
Ala
CGC
[Ensembl]
¡û
Identical group No.621300 (2 seq.)
>W1711413299
MGVQ01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
10463
10389
-
Ala
CGC
[ENA]
¡û
>W1711413390
MGVS01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
10167
10241
+
Ala
CGC
[ENA]
¡û
Identical group No.640870 (1 seq.)
>W1711413276
MGVP01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
3053
3128
+
Ala
CGC
[ENA]
¡û
Identical group No.652904 (1 seq.)
>W1910727602
MGUO01000020
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
866
941
+
Ala
CGC
[ENA]
¡û
Identical group No.782524 (3 seq.)
>C08011127
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
859614
859684
+
Ala
CGC
-
¡û
>C181002084
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
848583
848653
+
Ala
CGC
-
¡û
>ENV000877
AP009510
Environmental sample from ENV division of INSDC
859614
859687
+
Ala
CGC
[ENA]
Identical group No.806617 (4 seq.)
>W1710917280
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
307647
307719
+
Ala
CGC
[ENA]
¡û
>W1710917357
LNVX01000652
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2786
2858
+
Ala
CGC
[ENA]
¡û
>WENV170715858
LQAB01017804
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2993
2921
-
Ala
CGC
[ENA]
¢þ
>WENV170715897
LQAB01019409
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1529
1601
+
Ala
CGC
[ENA]
¢þ
Identical group No.824315 (1 seq.)
>W1711581916
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
5627
5700
+
Ala
CGC
[ENA]
¡û
Identical group No.828548 (1 seq.)
>W1711583343
MNXB01000073
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
16887
16958
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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