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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CGG
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276802 (4 seq.)
>W1711412137
MGTW01000077
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
12013
12090
+
Pro
CGG
[ENA]
¡û
>W1711412250
MGTZ01000057
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
35168
35091
-
Pro
CGG
[ENA]
¡û
>W1711412256
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
14753
14829
+
Pro
CGG
[ENA]
¡û
>W1711412454
MGUG01000007
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
107344
107422
+
Pro
CGG
[ENA]
¡û
Identical group No.276810 (1 seq.)
>W1711412841
MGVC01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
38455
38530
+
Pro
CGG
[ENA]
¡û
Identical group No.276819 (3 seq.)
>W1711413310
MGVQ01000056
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
2714
2789
+
Pro
CGG
[ENA]
¡û
>W1711413383
MGVS01000077
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
96
171
+
Pro
CGG
[ENA]
¡û
>W1711413414
MGVT01000097
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
12017
12092
+
Pro
CGG
[ENA]
¡û
Identical group No.350334 (5 seq.)
>W1711412686
MGUY01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
4771
4696
-
Pro
CGG
[ENA]
¡û
>W1711412742
MGUZ01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
61710
61635
-
Pro
CGG
[ENA]
¡û
>W1711412931
MGVE01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
61703
61628
-
Pro
CGG
[ENA]
¡û
>W1711413108
MGVK01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
24803
24878
+
Pro
CGG
[ENA]
¡û
>W1711413153
MGVL01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
61608
61533
-
Pro
CGG
[ENA]
¡û
Identical group No.361937 (5 seq.)
>W1711412074
MGTV01000011
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
1056
981
-
Pro
CGG
[ENA]
¡û
>W1711412394
MGUE01000010
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
10006
10084
+
Pro
CGG
[ENA]
¡û
>W1711412541
MGUI01000025
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
11501
11579
+
Pro
CGG
[ENA]
¡û
>W1711412626
MGUK01000075
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
7186
7111
-
Pro
CGG
[ENA]
¡û
>WENV181230927
OFEK01005525
[OFEK] activated sludge metagenome; Anaerobic digester
1095
1020
-
Pro
CGG
[ENA]
¢þ
Identical group No.361939 (1 seq.)
>W1711412877
MGVD01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
3843
3918
+
Pro
CGG
[ENA]
¡û
Identical group No.361951 (1 seq.)
>W1711413223
MGVN01000157
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
30044
30119
+
Pro
CGG
[ENA]
¡û
Identical group No.362288 (7 seq.)
>W1710917325
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
16996
16921
-
Pro
CGG
[ENA]
¡û
>W1710917349
LNVX01000575
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1274
1199
-
Pro
CGG
[ENA]
¡û
>WENV170715478
LQAB01002143
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
17762
17687
-
Pro
CGG
[ENA]
¢þ
>WENV170715640
LQAB01008863
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
604
529
-
Pro
CGG
[ENA]
¢þ
>WENV170715785
LQAB01015336
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1238
1163
-
Pro
CGG
[ENA]
¢þ
>WENV170715889
LQAB01018930
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4001
3926
-
Pro
CGG
[ENA]
¢þ
>WENV170715895
LQAB01019404
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
257
332
+
Pro
CGG
[ENA]
¢þ
Identical group No.415186 (1 seq.)
>C151053012
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
528415
528490
+
Pro
CGG
[Ensembl]
¡û
Identical group No.416398 (1 seq.)
>W1711581943
MNUS01000156
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
14145
14069
-
Pro
CGG
[ENA]
¡û
Identical group No.429862 (1 seq.)
>W1711583341
MNXB01000064
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
12111
12036
-
Pro
CGG
[ENA]
¡û
Identical group No.458029 (8 seq.)
>W1711412151
MGTX01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
126818
126893
+
Pro
CGG
[ENA]
¡û
>W1711412505
MGUH01000056
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
27901
27826
-
Pro
CGG
[ENA]
¡û
>W1711412673
MGUL01000132
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
11150
11075
-
Pro
CGG
[ENA]
¡û
>W1711413342
MGVR01000175
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
4416
4491
+
Pro
CGG
[ENA]
¡û
>WENV180023559
FTHZ01011518
[FTHZ] metagenome; soil
173
248
+
Pro
CGG
[ENA]
¢þ
>WENV180252498
OBEQ010454349
[OBEQ] groundwater metagenome; groundwater
1098
1170
+
Pro
CGG
[ENA]
¢þ
>WENV180261907
OBEQ011337016
[OBEQ] groundwater metagenome; groundwater
3211
3136
-
Pro
CGG
[ENA]
¢þ
>WENV183680231
ORMF010153044
[ORMF] groundwater metagenome; groundwater
1074
1149
+
Pro
CGG
[ENA]
¢þ
Identical group No.464828 (4 seq.)
>C08004658
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
976289
976361
+
Pro
CGG
[Ensembl]
¡û
>WENV183645135
OQVQ01001202
[OQVQ] human gut metagenome; human gut
9342
9417
+
Pro
CGG
[ENA]
¢þ
>WENV183654521
OQWA01057079
[OQWA] human gut metagenome; human gut
39
114
+
Pro
CGG
[ENA]
¢þ
>W09107482
ABIQ01000003
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
131839
131911
+
Pro
CGG
[ENA]
¡û
Identical group No.481762 (4 seq.)
>W1711411910
MGTR01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
10704
10776
+
Pro
CGG
[ENA]
¡û
>W1910727584
MGUN01000021
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
2254
2182
-
Pro
CGG
[ENA]
¡û
>W1910727828
MGUU01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
1823
1751
-
Pro
CGG
[ENA]
¡û
>W1910727901
MGUW01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
1179
1107
-
Pro
CGG
[ENA]
¡û
Identical group No.486706 (3 seq.)
>W1711411946
MGTS01000014
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
56660
56586
-
Pro
CGG
[ENA]
¡û
>W1711412319
MGUB01000105
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
2524
2450
-
Pro
CGG
[ENA]
¡û
>W1711412581
MGUJ01000064
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
2142
2068
-
Pro
CGG
[ENA]
¡û
Identical group No.505282 (8 seq.)
>W1711412022
MGTU01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
26790
26864
+
Pro
CGG
[ENA]
¡û
>W1711412386
MGUD01000028
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
32243
32169
-
Pro
CGG
[ENA]
¡û
>W1711412423
MGUE01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
15301
15375
+
Pro
CGG
[ENA]
¡û
>W1711412804
MGVB01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
3655
3729
+
Pro
CGG
[ENA]
¡û
>W1711413034
MGVH01000090
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
9252
9326
+
Pro
CGG
[ENA]
¡û
>WENV183664443
ORJL010379851
[ORJL] groundwater metagenome; groundwater
183
258
+
Pro
CGG
[ENA]
¢þ
>W1910727631
MGUP01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
696
622
-
Pro
CGG
[ENA]
¡û
>W1910727869
MGUV01000163
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
7849
7775
-
Pro
CGG
[ENA]
¡û
Identical group No.508672 (1 seq.)
>W1711412194
MGTY01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
71751
71679
-
Pro
CGG
[ENA]
¡û
Identical group No.508739 (1 seq.)
>W1711413056
MGVI01000375
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
241
169
-
Pro
CGG
[ENA]
¡û
Identical group No.508899 (1 seq.)
>W1711581878
MNUR01000034
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
7460
7534
+
Pro
CGG
[ENA]
¡û
Identical group No.555739 (10 seq.)
>W1712038704
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
86491
86566
+
Pro
CGG
[ENA]
¡û
>WENV180231122
OBCN01001377
[OBCN] human gut metagenome; human gut
3006
3081
+
Pro
CGG
[ENA]
¢þ
>WENV180404663
OBSA01024231
[OBSA] human gut metagenome; ENVO:feces
235
310
+
Pro
CGG
[ENA]
¢þ
>WENV181647438
OGNQ01000015
[OGNQ] metagenome; Human gut stool
30916
30991
+
Pro
CGG
[ENA]
¢þ
>WENV181691346
OGOZ01005587
[OGOZ] human gut metagenome; faeces
3778
3703
-
Pro
CGG
[ENA]
¢þ
>WENV182658499
OJML01000061
[OJML] human gut metagenome; feces
37088
37013
-
Pro
CGG
[ENA]
¢þ
>WENV183070583
OLIS01000071
[OLIS] human gut metagenome; feces
27004
27079
+
Pro
CGG
[ENA]
¢þ
>WENV183640412
OQVL01004152
[OQVL] human gut metagenome; human gut
4273
4198
-
Pro
CGG
[ENA]
¢þ
>WENV183643090
OQVO01001398
[OQVO] human gut metagenome; human gut
4388
4463
+
Pro
CGG
[ENA]
¢þ
>WENV183654122
OQWA01011071
[OQWA] human gut metagenome; human gut
1035
960
-
Pro
CGG
[ENA]
¢þ
Identical group No.611622 (3 seq.)
>WENV180252186
OBEQ010428346
[OBEQ] groundwater metagenome; groundwater
699
771
+
Pro
CGG
[ENA]
¢þ
>WENV180271888
OBEQ012325703
[OBEQ] groundwater metagenome; groundwater
634
706
+
Pro
CGG
[ENA]
¢þ
>W1910727730
MGUR01000030
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
15106
15180
+
Pro
CGG
[ENA]
¡û
Identical group No.652907 (1 seq.)
>W1910727624
MGUO01000262
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
2614
2542
-
Pro
CGG
[ENA]
¡û
Identical group No.738763 (1 seq.)
>W1910727693
MGUQ01000062
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
13880
13951
+
Pro
CGG
[ENA]
¡û
Identical group No.751916 (1 seq.)
>W1720003027
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
5943
6018
+
Pro
CGG
[ENA]
¡û
Identical group No.770638 (1 seq.)
>W1910727754
MGUS01000031
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
2768
2839
+
Pro
CGG
[ENA]
¡û
Identical group No.781045 (5 seq.)
>W1711412011
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
160466
160538
+
Pro
CGG
[ENA]
¡û
>W1711412346
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
75378
75306
-
Pro
CGG
[ENA]
¡û
>W1711412780
MGVA01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
13332
13260
-
Pro
CGG
[ENA]
¡û
>W1711412992
MGVG01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
13345
13273
-
Pro
CGG
[ENA]
¡û
>W1711413278
MGVP01000085
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
1620
1692
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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