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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CGT
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458175 (2 seq.)
>W1711412486
MGUG01000054
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
103666
103738
+
Thr
CGT
[ENA]
¡û
>W1711581902
MNUR01000096
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
10472
10544
+
Thr
CGT
[ENA]
¡û
Identical group No.464784 (3 seq.)
>C08011125
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
569511
569583
+
Thr
CGT
-
¡û
>C181002101
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
721726
721654
-
Thr
CGT
-
¡û
>ENV000863
AP009510
Environmental sample from ENV division of INSDC
569511
569586
+
Thr
CGT
[ENA]
Identical group No.464830 (2 seq.)
>C08004676
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
589879
589807
-
Thr
CGT
[Ensembl]
¡û
>W09107485
ABIQ01000004
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
110225
110297
+
Thr
CGT
[ENA]
¡û
Identical group No.508669 (4 seq.)
>W1711412052
MGTU01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
2242
2314
+
Thr
CGT
[ENA]
¡û
>W1711412219
MGTZ01000007
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
105370
105298
-
Thr
CGT
[ENA]
¡û
>W1711412421
MGUE01000048
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
2246
2318
+
Thr
CGT
[ENA]
¡û
>W1711412570
MGUI01000058
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
50014
49942
-
Thr
CGT
[ENA]
¡û
Identical group No.508736 (1 seq.)
>W1711413019
MGVH01000039
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
13728
13656
-
Thr
CGT
[ENA]
¡û
Identical group No.552130 (1 seq.)
>W1711412621
MGUK01000048
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
16096
16024
-
Thr
CGT
[ENA]
¡û
Identical group No.552143 (1 seq.)
>W1711413236
MGVN01000216
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
33444
33369
-
Thr
CGT
[ENA]
¡û
Identical group No.552535 (7 seq.)
>W1710917328
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
8434
8362
-
Thr
CGT
[ENA]
¡û
>W1710917359
LNVX01000680
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2372
2300
-
Thr
CGT
[ENA]
¡û
>W1710917361
LNVX01000712
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1230
1158
-
Thr
CGT
[ENA]
¡û
>W1710917363
LNVX01000747
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1155
1083
-
Thr
CGT
[ENA]
¡û
>W1710917365
LNVX01000774
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2616
2688
+
Thr
CGT
[ENA]
¡û
>WENV170715481
LQAB01002143
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
9181
9109
-
Thr
CGT
[ENA]
¢þ
>WENV170715701
LQAB01011436
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2642
2714
+
Thr
CGT
[ENA]
¢þ
Identical group No.552564 (2 seq.)
>W1710917369
LNVX01000776
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1321
1249
-
Thr
CGT
[ENA]
¡û
>WENV170715633
LQAB01008649
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4228
4156
-
Thr
CGT
[ENA]
¢þ
Identical group No.552570 (2 seq.)
>W1710917367
LNVX01000775
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2633
2561
-
Thr
CGT
[ENA]
¡û
>WENV170715672
LQAB01009753
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
977
905
-
Thr
CGT
[ENA]
¢þ
Identical group No.592609 (1 seq.)
>W1910727691
MGUQ01000057
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
785
713
-
Thr
CGT
[ENA]
¡û
Identical group No.596059 (1 seq.)
>W1712038720
NFJD01000002
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
264929
265002
+
Thr
CGT
[ENA]
¡û
Identical group No.611615 (1 seq.)
>W1910727660
MGUP01000871
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2727
2799
+
Thr
CGT
[ENA]
¡û
Identical group No.611620 (1 seq.)
>W1910727725
MGUR01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
8168
8096
-
Thr
CGT
[ENA]
¡û
Identical group No.612191 (1 seq.)
>C151053039
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
692455
692383
-
Thr
CGT
[Ensembl]
¡û
Identical group No.628913 (1 seq.)
>W1711583330
MNXB01000022
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
21225
21153
-
Thr
CGT
[ENA]
¡û
Identical group No.639314 (1 seq.)
>W1910727763
MGUS01000049
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
10744
10816
+
Thr
CGT
[ENA]
¡û
Identical group No.656676 (2 seq.)
>W1711412142
MGTX01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
222163
222090
-
Thr
CGT
[ENA]
¡û
>W1711412526
MGUH01000117
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
13693
13620
-
Thr
CGT
[ENA]
¡û
Identical group No.656789 (5 seq.)
>W1711412007
MGTT01000027
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
87415
87344
-
Thr
CGT
[ENA]
¡û
>W1711412283
MGUA01000033
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
81458
81387
-
Thr
CGT
[ENA]
¡û
>W1711412348
MGUC01000022
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
87413
87342
-
Thr
CGT
[ENA]
¡û
>W1711412781
MGVA01000039
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
3549
3620
+
Thr
CGT
[ENA]
¡û
>W1711412980
MGVG01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
3580
3651
+
Thr
CGT
[ENA]
¡û
Identical group No.656800 (1 seq.)
>W1711412853
MGVC01000048
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
52309
52238
-
Thr
CGT
[ENA]
¡û
Identical group No.656808 (1 seq.)
>W1711413406
MGVT01000060
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
25832
25759
-
Thr
CGT
[ENA]
¡û
Identical group No.670919 (4 seq.)
>W1711411928
MGTR01000097
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
4394
4465
+
Thr
CGT
[ENA]
¡û
>W1910727575
MGUN01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
338489
338560
+
Thr
CGT
[ENA]
¡û
>W1910727820
MGUU01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
338480
338551
+
Thr
CGT
[ENA]
¡û
>W1910727892
MGUW01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
338492
338563
+
Thr
CGT
[ENA]
¡û
Identical group No.673792 (3 seq.)
>W1711411969
MGTS01000035
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
35714
35643
-
Thr
CGT
[ENA]
¡û
>W1711412322
MGUB01000112
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
4226
4297
+
Thr
CGT
[ENA]
¡û
>W1711412599
MGUJ01000134
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
35712
35641
-
Thr
CGT
[ENA]
¡û
Identical group No.686933 (2 seq.)
>W1711412093
MGTV01000039
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
118901
118830
-
Thr
CGT
[ENA]
¡û
>W1711412447
MGUF01000100
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
10681
10610
-
Thr
CGT
[ENA]
¡û
Identical group No.705563 (1 seq.)
>W1711412696
MGUY01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
13220
13147
-
Thr
CGT
[ENA]
¡û
Identical group No.721028 (1 seq.)
>W1711412655
MGUL01000049
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
26150
26221
+
Thr
CGT
[ENA]
¡û
Identical group No.727680 (7 seq.)
>W1711412740
MGUZ01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
13387
13316
-
Thr
CGT
[ENA]
¡û
>W1711412927
MGVE01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
13368
13297
-
Thr
CGT
[ENA]
¡û
>W1711412961
MGVF01000128
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
9859
9930
+
Thr
CGT
[ENA]
¡û
>W1711413082
MGVJ01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
78
7
-
Thr
CGT
[ENA]
¡û
>W1711413100
MGVK01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
13394
13323
-
Thr
CGT
[ENA]
¡û
>W1711413147
MGVL01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
13616
13545
-
Thr
CGT
[ENA]
¡û
>W1711413253
MGVO01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
9693
9764
+
Thr
CGT
[ENA]
¡û
Identical group No.727684 (2 seq.)
>W1711413339
MGVR01000128
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
7260
7189
-
Thr
CGT
[ENA]
¡û
>WENV170555887
CXWL01002945
[CXWL] groundwater metagenome; biofilm material
961
1032
+
Thr
CGT
[ENA]
¢þ
Identical group No.738761 (1 seq.)
>W1910727685
MGUQ01000042
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
2726
2653
-
Thr
CGT
[ENA]
¡û
Identical group No.751907 (1 seq.)
>W1730031827
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
6584
6658
+
Thr
CGT
[ENA]
¡û
Identical group No.752084 (1 seq.)
>W1711413179
MGVM01000113
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
2600
2671
+
Thr
CGT
[ENA]
¡û
Identical group No.752187 (1 seq.)
>W1711581932
MNUS01000094
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
21748
21819
+
Thr
CGT
[ENA]
¡û
Identical group No.757050 (1 seq.)
>W1711413392
MGVS01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
5711
5640
-
Thr
CGT
[ENA]
¡û
Identical group No.779132 (1 seq.)
>W1910727607
MGUO01000080
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
11475
11404
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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