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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CTG
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.459013 (8 seq.)
>W1710917290
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
52218
52143
-
Gln
CTG
[ENA]
¡û
>W1710917297
LNVX01000303
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3644
3569
-
Gln
CTG
[ENA]
¡û
>W1710917299
LNVX01000307
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
6
81
+
Gln
CTG
[ENA]
¡û
>WENV170715440
LQAB01000714
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1792
1717
-
Gln
CTG
[ENA]
¢þ
>WENV170715465
LQAB01001435
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
501
576
+
Gln
CTG
[ENA]
¢þ
>WENV170715848
LQAB01017548
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
8815
8740
-
Gln
CTG
[ENA]
¢þ
>WENV170715861
LQAB01017978
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1299
1224
-
Gln
CTG
[ENA]
¢þ
>WENV170716357
LSPZ01008689
[LSPZ] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 2
260
333
+
Gln
CTG
[ENA]
¢þ
Identical group No.464779 (3 seq.)
>C08011119
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
367929
368004
+
Gln
CTG
-
¡û
>C181002076
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
359011
359084
+
Gln
CTG
-
¡û
>ENV000856
AP009510
Environmental sample from ENV division of INSDC
367928
368005
+
Gln
CTG
[ENA]
Identical group No.612185 (1 seq.)
>C151053024
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1478614
1478688
+
Gln
CTG
[Ensembl]
¡û
Identical group No.639317 (1 seq.)
>W1910727780
MGUS01000123
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
2734
2659
-
Gln
CTG
[ENA]
¡û
Identical group No.656793 (1 seq.)
>W1711412831
MGVC01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
54789
54862
+
Gln
CTG
[ENA]
¡û
Identical group No.713535 (1 seq.)
>W1711412897
MGVD01000137
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
1082
1009
-
Gln
CTG
[ENA]
¡û
Identical group No.752082 (1 seq.)
>W1711413172
MGVM01000071
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
4825
4898
+
Gln
CTG
[ENA]
¡û
Identical group No.781003 (3 seq.)
>W1711412164
MGTX01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
28714
28787
+
Gln
CTG
[ENA]
¡û
>W1711412512
MGUH01000085
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
165
92
-
Gln
CTG
[ENA]
¡û
>W1711412662
MGUL01000090
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
20428
20501
+
Gln
CTG
[ENA]
¡û
Identical group No.781041 (3 seq.)
>W1711412082
MGTV01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
65953
66026
+
Gln
CTG
[ENA]
¡û
>W1711412431
MGUF01000009
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
5322
5249
-
Gln
CTG
[ENA]
¡û
>W1711412460
MGUG01000012
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
23346
23273
-
Gln
CTG
[ENA]
¡û
Identical group No.781044 (3 seq.)
>W1711412775
MGVA01000035
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
16230
16302
+
Gln
CTG
[ENA]
¡û
>W1711412988
MGVG01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
46405
46333
-
Gln
CTG
[ENA]
¡û
>WENV181231218
OFEK01014125
[OFEK] activated sludge metagenome; Anaerobic digester
1268
1341
+
Gln
CTG
[ENA]
¢þ
Identical group No.782515 (2 seq.)
>C08004682
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
190320
190250
-
Gln
CTG
[Ensembl]
¡û
>W09107476
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
200613
200540
-
Gln
CTG
[ENA]
¡û
Identical group No.787332 (4 seq.)
>W1711411919
MGTR01000055
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
4743
4670
-
Gln
CTG
[ENA]
¡û
>W1910727568
MGUN01000015
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
142924
142997
+
Gln
CTG
[ENA]
¡û
>W1910727854
MGUU01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
54196
54123
-
Gln
CTG
[ENA]
¡û
>W1910727884
MGUW01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
54211
54138
-
Gln
CTG
[ENA]
¡û
Identical group No.788772 (3 seq.)
>W1711411965
MGTS01000031
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
48935
48862
-
Gln
CTG
[ENA]
¡û
>W1711412312
MGUB01000074
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
22100
22027
-
Gln
CTG
[ENA]
¡û
>W1711412605
MGUJ01000148
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
40099
40026
-
Gln
CTG
[ENA]
¡û
Identical group No.792372 (9 seq.)
>W1712038737
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
180678
180751
+
Gln
CTG
[ENA]
¡û
>WENV180231629
OBCN01095365
[OBCN] human gut metagenome; human gut
143
216
+
Gln
CTG
[ENA]
¢þ
>WENV181648027
OGNQ01002576
[OGNQ] metagenome; Human gut stool
5545
5618
+
Gln
CTG
[ENA]
¢þ
>WENV181691076
OGOZ01002079
[OGOZ] human gut metagenome; faeces
8582
8509
-
Gln
CTG
[ENA]
¢þ
>WENV182658716
OJML01000448
[OJML] human gut metagenome; feces
120
47
-
Gln
CTG
[ENA]
¢þ
>WENV183639970
OQVL01000509
[OQVL] human gut metagenome; human gut
17143
17216
+
Gln
CTG
[ENA]
¢þ
>WENV183643215
OQVO01003964
[OQVO] human gut metagenome; human gut
329
402
+
Gln
CTG
[ENA]
¢þ
>WENV183645598
OQVQ01013642
[OQVQ] human gut metagenome; human gut
894
967
+
Gln
CTG
[ENA]
¢þ
>WENV183657421
OQWI01010974
[OQWI] human gut metagenome; human gut
2708
2781
+
Gln
CTG
[ENA]
¢þ
Identical group No.794461 (1 seq.)
>W1711412211
MGTY01000110
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
169
98
-
Gln
CTG
[ENA]
¡û
Identical group No.794526 (1 seq.)
>W1711581904
MNUR01000097
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
2120
2048
-
Gln
CTG
[ENA]
¡û
Identical group No.802869 (6 seq.)
>W1711412698
MGUY01000035
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
13725
13654
-
Gln
CTG
[ENA]
¡û
>W1711412753
MGUZ01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
28331
28260
-
Gln
CTG
[ENA]
¡û
>W1711412941
MGVE01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
252279
252350
+
Gln
CTG
[ENA]
¡û
>W1711413073
MGVJ01000055
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
5077
5148
+
Gln
CTG
[ENA]
¡û
>W1711413120
MGVK01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
28330
28259
-
Gln
CTG
[ENA]
¡û
>W1711413163
MGVL01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
28323
28252
-
Gln
CTG
[ENA]
¡û
Identical group No.805817 (1 seq.)
>W1910727927
MGUX01000100
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
552
480
-
Gln
CTG
[ENA]
¡û
Identical group No.806456 (3 seq.)
>W1711412287
MGUA01000034
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
47880
47807
-
Gln
CTG
[ENA]
¡û
>W1711412396
MGUE01000013
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
18195
18267
+
Gln
CTG
[ENA]
¡û
>W1711412569
MGUI01000055
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
9425
9352
-
Gln
CTG
[ENA]
¡û
Identical group No.806460 (1 seq.)
>W1711413194
MGVN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
40170
40097
-
Gln
CTG
[ENA]
¡û
Identical group No.813048 (2 seq.)
>W1711412125
MGTW01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
83396
83468
+
Gln
CTG
[ENA]
¡û
>W1711412242
MGTZ01000044
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
124
51
-
Gln
CTG
[ENA]
¡û
Identical group No.813049 (2 seq.)
>W1711412016
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
40095
40023
-
Gln
CTG
[ENA]
¡û
>W1711412343
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
195749
195821
+
Gln
CTG
[ENA]
¡û
Identical group No.823818 (1 seq.)
>W1910727652
MGUP01000715
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
500
428
-
Gln
CTG
[ENA]
¡û
Identical group No.824278 (1 seq.)
>W1711413268
MGVO01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
114
41
-
Gln
CTG
[ENA]
¡û
Identical group No.824320 (1 seq.)
>W1711581952
MNUS01000204
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
7578
7505
-
Gln
CTG
[ENA]
¡û
Identical group No.826413 (1 seq.)
>W1711413379
MGVS01000070
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
77108
77037
-
Gln
CTG
[ENA]
¡û
Identical group No.828524 (1 seq.)
>W1711413302
MGVQ01000019
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
14050
13978
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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