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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CTT
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276677 (3 seq.)
>W1711412140
MGTX01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
93805
93879
+
Lys
CTT
[ENA]
¡û
>W1711412515
MGUH01000097
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
3263
3189
-
Lys
CTT
[ENA]
¡û
>W1711412658
MGUL01000079
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
948
1022
+
Lys
CTT
[ENA]
¡û
Identical group No.450962 (1 seq.)
>W1910727628
MGUO01000304
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
4626
4699
+
Lys
CTT
[ENA]
¡û
Identical group No.458197 (2 seq.)
>W1711413297
MGVQ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
38918
38990
+
Lys
CTT
[ENA]
¡û
>W1711413421
MGVT01000120
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
5008
5080
+
Lys
CTT
[ENA]
¡û
Identical group No.464781 (3 seq.)
>C08011120
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
377565
377639
+
Lys
CTT
-
¡û
>C181002077
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
368680
368754
+
Lys
CTT
-
¡û
>ENV000857
AP009510
Environmental sample from ENV division of INSDC
377565
377642
+
Lys
CTT
[ENA]
Identical group No.464827 (2 seq.)
>C08004653
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
797814
797886
+
Lys
CTT
[Ensembl]
¡û
>W09107488
ABIQ01000005
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
43143
43071
-
Lys
CTT
[ENA]
¡û
Identical group No.481756 (4 seq.)
>WENV180250919
OBEQ010324961
[OBEQ] groundwater metagenome; groundwater
3101
3028
-
Lys
CTT
[ENA]
¢þ
>W1910727557
MGUN01000003
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
1795
1868
+
Lys
CTT
[ENA]
¡û
>W1910727851
MGUU01000023
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
1781
1854
+
Lys
CTT
[ENA]
¡û
>W1910727913
MGUW01000026
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
1805
1878
+
Lys
CTT
[ENA]
¡û
Identical group No.500910 (11 seq.)
>W1712038721
NFJD01000002
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
249806
249734
-
Lys
CTT
[ENA]
¡û
>WENV180231283
OBCN01006680
[OBCN] human gut metagenome; human gut
1241
1314
+
Lys
CTT
[ENA]
¢þ
>WENV181647936
OGNQ01001772
[OGNQ] metagenome; Human gut stool
11022
11095
+
Lys
CTT
[ENA]
¢þ
>WENV181691676
OGOZ01015812
[OGOZ] human gut metagenome; faeces
440
513
+
Lys
CTT
[ENA]
¢þ
>WENV182658777
OJML01000703
[OJML] human gut metagenome; feces
2014
1941
-
Lys
CTT
[ENA]
¢þ
>WENV183071231
OLIS01004324
[OLIS] human gut metagenome; feces
2014
1941
-
Lys
CTT
[ENA]
¢þ
>WENV183640825
OQVL01011697
[OQVL] human gut metagenome; human gut
3925
3998
+
Lys
CTT
[ENA]
¢þ
>WENV183642931
OQVO01000178
[OQVO] human gut metagenome; human gut
20705
20778
+
Lys
CTT
[ENA]
¢þ
>WENV183645607
OQVQ01013905
[OQVQ] human gut metagenome; human gut
1687
1614
-
Lys
CTT
[ENA]
¢þ
>WENV183650620
OQVT01031699
[OQVT] human gut metagenome; human gut
1811
1738
-
Lys
CTT
[ENA]
¢þ
>WENV183657457
OQWI01012763
[OQWI] human gut metagenome; human gut
404
477
+
Lys
CTT
[ENA]
¢þ
Identical group No.539211 (5 seq.)
>W1711412702
MGUY01000081
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
2531
2458
-
Lys
CTT
[ENA]
¡û
>W1711412751
MGUZ01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
112169
112096
-
Lys
CTT
[ENA]
¡û
>W1711412936
MGVE01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
4697
4770
+
Lys
CTT
[ENA]
¡û
>W1711413068
MGVJ01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
1465
1392
-
Lys
CTT
[ENA]
¡û
>W1711413161
MGVL01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
4683
4756
+
Lys
CTT
[ENA]
¡û
Identical group No.549710 (1 seq.)
>W1910727933
MGUX01000158
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
2191
2263
+
Lys
CTT
[ENA]
¡û
Identical group No.552111 (1 seq.)
>W1711411916
MGTR01000041
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
1727
1802
+
Lys
CTT
[ENA]
¡û
Identical group No.552136 (1 seq.)
>W1711413207
MGVN01000082
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
13368
13443
+
Lys
CTT
[ENA]
¡û
Identical group No.552138 (1 seq.)
>W1711413215
MGVN01000108
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
5651
5578
-
Lys
CTT
[ENA]
¡û
Identical group No.552530 (4 seq.)
>W1710917258
LNVX01000215
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
6113
6039
-
Lys
CTT
[ENA]
¡û
>WENV170715436
LQAB01000452
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
7459
7385
-
Lys
CTT
[ENA]
¢þ
>WENV170715669
LQAB01009747
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
810
884
+
Lys
CTT
[ENA]
¢þ
>WENV170715868
LQAB01018333
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
542
468
-
Lys
CTT
[ENA]
¢þ
Identical group No.552550 (5 seq.)
>W1710917270
LNVX01000242
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1987
1913
-
Lys
CTT
[ENA]
¡û
>W1710917291
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
43126
43052
-
Lys
CTT
[ENA]
¡û
>W1710917305
LNVX01000332
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
77
151
+
Lys
CTT
[ENA]
¡û
>WENV170715560
LQAB01005604
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2426
2352
-
Lys
CTT
[ENA]
¢þ
>WENV170715734
LQAB01012903
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
3980
4054
+
Lys
CTT
[ENA]
¢þ
Identical group No.574737 (2 seq.)
>W1711412957
MGVF01000115
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
6631
6705
+
Lys
CTT
[ENA]
¡û
>W1711413270
MGVO01000101
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
25202
25276
+
Lys
CTT
[ENA]
¡û
Identical group No.582263 (2 seq.)
>W1910727535
MGUM01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
10538
10463
-
Lys
CTT
[ENA]
¡û
>W1910727783
MGUT01000009
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
16178
16103
-
Lys
CTT
[ENA]
¡û
Identical group No.592606 (1 seq.)
>W1910727684
MGUQ01000041
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
13799
13871
+
Lys
CTT
[ENA]
¡û
Identical group No.611618 (2 seq.)
>WENV180262501
OBEQ011391816
[OBEQ] groundwater metagenome; groundwater
69
144
+
Lys
CTT
[ENA]
¢þ
>W1910727711
MGUR01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
5179
5252
+
Lys
CTT
[ENA]
¡û
Identical group No.612193 (1 seq.)
>C151053007
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
437577
437649
+
Lys
CTT
[Ensembl]
¡û
Identical group No.613458 (1 seq.)
>W1711581913
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
4835
4910
+
Lys
CTT
[ENA]
¡û
Identical group No.621297 (1 seq.)
>W1711413360
MGVS01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
35949
36021
+
Lys
CTT
[ENA]
¡û
Identical group No.656770 (11 seq.)
>W1711411977
MGTS01000042
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
129385
129312
-
Lys
CTT
[ENA]
¡û
>W1711412105
MGTW01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
23864
23793
-
Lys
CTT
[ENA]
¡û
>W1711412203
MGTY01000095
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
6616
6687
+
Lys
CTT
[ENA]
¡û
>W1711412229
MGTZ01000028
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
23277
23206
-
Lys
CTT
[ENA]
¡û
>W1711412281
MGUA01000031
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
34178
34107
-
Lys
CTT
[ENA]
¡û
>W1711412472
MGUG01000030
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
115636
115564
-
Lys
CTT
[ENA]
¡û
>W1711412558
MGUI01000046
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
84545
84617
+
Lys
CTT
[ENA]
¡û
>W1711412579
MGUJ01000053
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
15803
15730
-
Lys
CTT
[ENA]
¡û
>W1711412614
MGUK01000039
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
55505
55434
-
Lys
CTT
[ENA]
¡û
>WENV180261829
OBEQ011330292
[OBEQ] groundwater metagenome; groundwater
1034
1105
+
Lys
CTT
[ENA]
¢þ
>W1910727859
MGUV01000078
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
2239
2167
-
Lys
CTT
[ENA]
¡û
Identical group No.656780 (4 seq.)
>W1711411979
MGTT01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
146
220
+
Lys
CTT
[ENA]
¡û
>W1711412355
MGUC01000028
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
150
224
+
Lys
CTT
[ENA]
¡û
>W1711412761
MGVA01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
22041
21968
-
Lys
CTT
[ENA]
¡û
>W1711412997
MGVG01000042
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
214424
214497
+
Lys
CTT
[ENA]
¡û
Identical group No.656802 (1 seq.)
>W1711412867
MGVC01000077
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
12010
12083
+
Lys
CTT
[ENA]
¡û
Identical group No.686888 (8 seq.)
>W1711412031
MGTU01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
107171
107099
-
Lys
CTT
[ENA]
¡û
>W1711412091
MGTV01000038
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
3516
3444
-
Lys
CTT
[ENA]
¡û
>W1711412380
MGUD01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
26858
26786
-
Lys
CTT
[ENA]
¡û
>W1711412428
MGUE01000053
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
125152
125224
+
Lys
CTT
[ENA]
¡û
>W1711412827
MGVB01000168
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
3666
3737
+
Lys
CTT
[ENA]
¡û
>W1711413028
MGVH01000059
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
8057
7986
-
Lys
CTT
[ENA]
¡û
>W1711581949
MNUS01000180
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
2405
2333
-
Lys
CTT
[ENA]
¡û
>WENV181231214
OFEK01013850
[OFEK] activated sludge metagenome; Anaerobic digester
1289
1360
+
Lys
CTT
[ENA]
¢þ
Identical group No.687066 (1 seq.)
>W1711581869
MNUR01000001
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
23805
23877
+
Lys
CTT
[ENA]
¡û
Identical group No.713531 (1 seq.)
>W1711412874
MGVD01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
1261
1188
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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