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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GAA
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458194 (1 seq.)
>W1711413405
MGVT01000060
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
26020
25946
-
Phe
GAA
[ENA]
¡û
Identical group No.464783 (10 seq.)
>W1710917327
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
8580
8506
-
Phe
GAA
[ENA]
¡û
>W1710917358
LNVX01000680
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2518
2444
-
Phe
GAA
[ENA]
¡û
>W1710917360
LNVX01000712
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1376
1302
-
Phe
GAA
[ENA]
¡û
>W1710917362
LNVX01000747
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1301
1227
-
Phe
GAA
[ENA]
¡û
>W1710917364
LNVX01000774
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2470
2544
+
Phe
GAA
[ENA]
¡û
>C08011124
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
569359
569433
+
Phe
GAA
-
¡û
>WENV170715480
LQAB01002143
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
9327
9253
-
Phe
GAA
[ENA]
¢þ
>WENV170715700
LQAB01011436
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2496
2570
+
Phe
GAA
[ENA]
¢þ
>C181002100
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
721878
721804
-
Phe
GAA
-
¡û
>ENV000862
AP009510
Environmental sample from ENV division of INSDC
569359
569436
+
Phe
GAA
[ENA]
Identical group No.481755 (4 seq.)
>W1711411921
MGTR01000064
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
8475
8401
-
Phe
GAA
[ENA]
¡û
>W1910727556
MGUN01000002
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
163007
163081
+
Phe
GAA
[ENA]
¡û
>W1910727841
MGUU01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
66613
66539
-
Phe
GAA
[ENA]
¡û
>W1910727912
MGUW01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
319453
319527
+
Phe
GAA
[ENA]
¡û
Identical group No.526954 (6 seq.)
>W1711137543
LVBN01000075
Spirochaetota
Spirochaetales bacterium Spiro_12 [LVBN]
3187
3259
+
Phe
GAA
[ENA]
¡û
>W1711413289
MGVP01000526
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
216
144
-
Phe
GAA
[ENA]
¡û
>W1711629319
MPOU01000030
Unclassified
bacterium EBM-40 [MPOU]
9976
9904
-
Phe
GAA
[ENA]
¡û
>WENV181230635
OFEK01001980
[OFEK] activated sludge metagenome; Anaerobic digester
3235
3307
+
Phe
GAA
[ENA]
¢þ
>WENV181311882
OFJB01018942
[OFJB] sludge metagenome; sludge
295
367
+
Phe
GAA
[ENA]
¢þ
>W1610948663
LVBN01000075
Spirochaetota
Spirochaetales bacterium Spiro_12 [LVBN]
3187
3259
+
Phe
GAA
[ENA]
¡û
Identical group No.539210 (8 seq.)
>W1711412695
MGUY01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
13325
13251
-
Phe
GAA
[ENA]
¡û
>W1711412739
MGUZ01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
13493
13419
-
Phe
GAA
[ENA]
¡û
>W1711412926
MGVE01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
13474
13400
-
Phe
GAA
[ENA]
¡û
>W1711413081
MGVJ01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
184
110
-
Phe
GAA
[ENA]
¡û
>W1711413099
MGVK01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
13500
13426
-
Phe
GAA
[ENA]
¡û
>W1711413146
MGVL01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
13722
13648
-
Phe
GAA
[ENA]
¡û
>W1711413234
MGVN01000206
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
4227
4301
+
Phe
GAA
[ENA]
¡û
>WENV170002964
AGTN01181291
[AGTN] bioreactor metagenome; poplar biomass
456
528
+
Phe
GAA
[ENA]
¢þ
Identical group No.552141 (1 seq.)
>W1711413226
MGVN01000187
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
2061
2133
+
Phe
GAA
[ENA]
¡û
Identical group No.552563 (4 seq.)
>W1710917366
LNVX01000775
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2789
2715
-
Phe
GAA
[ENA]
¡û
>W1710917368
LNVX01000776
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1477
1403
-
Phe
GAA
[ENA]
¡û
>WENV170715632
LQAB01008649
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4384
4310
-
Phe
GAA
[ENA]
¢þ
>WENV170715671
LQAB01009753
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1133
1059
-
Phe
GAA
[ENA]
¢þ
Identical group No.552602 (4 seq.)
>W1711412960
MGVF01000128
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
9597
9671
+
Phe
GAA
[ENA]
¡û
>W1711413251
MGVO01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
8874
8948
+
Phe
GAA
[ENA]
¡û
>W1711413252
MGVO01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
9431
9505
+
Phe
GAA
[ENA]
¡û
>WENV170715881
LQAB01018808
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
676
750
+
Phe
GAA
[ENA]
¢þ
Identical group No.582267 (2 seq.)
>W1910727547
MGUM01000071
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
3459
3533
+
Phe
GAA
[ENA]
¡û
>W1910727796
MGUT01000058
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
8320
8394
+
Phe
GAA
[ENA]
¡û
Identical group No.592608 (1 seq.)
>W1910727688
MGUQ01000050
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
29007
29081
+
Phe
GAA
[ENA]
¡û
Identical group No.612192 (1 seq.)
>C151053003
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
242826
242900
+
Phe
GAA
[Ensembl]
¡û
Identical group No.613456 (1 seq.)
>W1711581911
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
4514
4589
+
Pseudo
GAA
[ENA]
¡û
Identical group No.621301 (1 seq.)
>W1711413391
MGVS01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
5878
5804
-
Phe
GAA
[ENA]
¡û
Identical group No.639315 (1 seq.)
>W1910727769
MGUS01000066
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
4900
4972
+
Phe
GAA
[ENA]
¡û
Identical group No.656685 (6 seq.)
>W1711412160
MGTX01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
18354
18428
+
Phe
GAA
[ENA]
¡û
>W1711412530
MGUH01000126
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
2978
3052
+
Phe
GAA
[ENA]
¡û
>W1711412641
MGUL01000012
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1673
1747
+
Phe
GAA
[ENA]
¡û
>W1711413348
MGVR01000252
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
2131
2204
+
Phe
GAA
[ENA]
¡û
>WENV180263144
OBEQ011449409
[OBEQ] groundwater metagenome; groundwater
6613
6539
-
Phe
GAA
[ENA]
¢þ
>WENV170555539
CXWL01000929
[CXWL] groundwater metagenome; biofilm material
33916
33990
+
Phe
GAA
[ENA]
¢þ
Identical group No.656776 (4 seq.)
>W1711412051
MGTU01000027
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
157974
158047
+
Phe
GAA
[ENA]
¡û
>W1711412401
MGUE01000022
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
20352
20425
+
Phe
GAA
[ENA]
¡û
>W1711412483
MGUG01000052
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
8695
8622
-
Phe
GAA
[ENA]
¡û
>W1711412622
MGUK01000050
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
18718
18645
-
Phe
GAA
[ENA]
¡û
Identical group No.656782 (4 seq.)
>W1711412002
MGTT01000020
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
20793
20721
-
Phe
GAA
[ENA]
¡û
>W1711412337
MGUC01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
20700
20628
-
Phe
GAA
[ENA]
¡û
>W1711412765
MGVA01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
124470
124542
+
Phe
GAA
[ENA]
¡û
>W1711412978
MGVG01000018
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
90711
90783
+
Phe
GAA
[ENA]
¡û
Identical group No.656799 (2 seq.)
>W1711412852
MGVC01000048
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
52406
52333
-
Phe
GAA
[ENA]
¡û
>W1711413178
MGVM01000113
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
2490
2563
+
Phe
GAA
[ENA]
¡û
Identical group No.660481 (12 seq.)
>WENV181647942
OGNQ01001826
[OGNQ] metagenome; Human gut stool
6005
6078
+
Phe
GAA
[ENA]
¢þ
>WENV181691305
OGOZ01004828
[OGOZ] human gut metagenome; faeces
1215
1288
+
Phe
GAA
[ENA]
¢þ
>WENV182658544
OJML01000087
[OJML] human gut metagenome; feces
15182
15255
+
Phe
GAA
[ENA]
¢þ
>C08004670
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1449172
1449100
-
Phe
GAA
[Ensembl]
¡û
>WENV183070617
OLIS01000120
[OLIS] human gut metagenome; feces
15194
15267
+
Phe
GAA
[ENA]
¢þ
>WENV183640508
OQVL01005417
[OQVL] human gut metagenome; human gut
1332
1259
-
Phe
GAA
[ENA]
¢þ
>WENV183643074
OQVO01001191
[OQVO] human gut metagenome; human gut
6597
6524
-
Phe
GAA
[ENA]
¢þ
>WENV183645686
OQVQ01019069
[OQVQ] human gut metagenome; human gut
8
81
+
Phe
GAA
[ENA]
¢þ
>WENV183651323
OQVT01125593
[OQVT] human gut metagenome; human gut
299
372
+
Phe
GAA
[ENA]
¢þ
>WENV183654175
OQWA01013733
[OQWA] human gut metagenome; human gut
1378
1305
-
Phe
GAA
[ENA]
¢þ
>WENV183657324
OQWI01007464
[OQWI] human gut metagenome; human gut
2434
2507
+
Phe
GAA
[ENA]
¢þ
>W09107453
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
184151
184223
+
Phe
GAA
[ENA]
¡û
Identical group No.673794 (14 seq.)
>W1711411939
MGTS01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
41267
41340
+
Phe
GAA
[ENA]
¡û
>W1711412081
MGTV01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
34429
34502
+
Phe
GAA
[ENA]
¡û
>W1711412124
MGTW01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
50931
51004
+
Phe
GAA
[ENA]
¡û
>W1711412241
MGTZ01000044
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
32567
32494
-
Phe
GAA
[ENA]
¡û
>W1711412285
MGUA01000034
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
74828
74755
-
Phe
GAA
[ENA]
¡û
>W1711412324
MGUB01000117
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
25005
24932
-
Phe
GAA
[ENA]
¡û
>W1711412450
MGUF01000116
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
13197
13124
-
Phe
GAA
[ENA]
¡û
>W1711412568
MGUI01000055
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
40147
40074
-
Phe
GAA
[ENA]
¡û
>W1711412603
MGUJ01000146
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
2326
2399
+
Phe
GAA
[ENA]
¡û
>W1711412803
MGVB01000035
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
6268
6341
+
Phe
GAA
[ENA]
¡û
>W1711413018
MGVH01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
39315
39388
+
Phe
GAA
[ENA]
¡û
>WENV183678819
ORJL011927044
[ORJL] groundwater metagenome; groundwater
1127
1054
-
Phe
GAA
[ENA]
¢þ
>W1910727663
MGUP01000940
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
5612
5685
+
Phe
GAA
[ENA]
¡û
>W1910727871
MGUV01000175
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
2460
2387
-
Phe
GAA
[ENA]
¡û
Identical group No.686892 (1 seq.)
>W1711412181
MGTY01000001
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
26640
26568
-
Phe
GAA
[ENA]
¡û
Identical group No.687071 (2 seq.)
>W1711581903
MNUR01000097
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
36759
36686
-
Phe
GAA
[ENA]
¡û
>WENV181230790
OFEK01003429
[OFEK] activated sludge metagenome; Anaerobic digester
2612
2541
-
Phe
GAA
[ENA]
¢þ
Identical group No.740750 (1 seq.)
>W1712038738
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
226437
226510
+
Phe
GAA
[ENA]
¡û
Identical group No.751129 (1 seq.)
>W1910727724
MGUR01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
10219
10145
-
Phe
GAA
[ENA]
¡û
Identical group No.752191 (1 seq.)
>W1711581945
MNUS01000158
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
3913
3987
+
Phe
GAA
[ENA]
¡û
Identical group No.761739 (1 seq.)
>W1711583329
MNXB01000022
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
21312
21239
-
Phe
GAA
[ENA]
¡û
Identical group No.779139 (1 seq.)
>W1910727625
MGUO01000264
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
627
698
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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