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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GAG
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113405 (4 seq.)
>W1711412177
MGTX01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
95110
95193
+
Leu
GAG
[ENA]
¡û
>W1711412528
MGUH01000124
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
6123
6040
-
Leu
GAG
[ENA]
¡û
>W1711412656
MGUL01000051
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1647
1564
-
Leu
GAG
[ENA]
¡û
>WENV183687886
ORMF011205818
[ORMF] groundwater metagenome; groundwater
2
85
+
Leu
GAG
[ENA]
¢þ
Identical group No.175478 (1 seq.)
>W1711413387
MGVS01000083
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
18447
18363
-
Leu
GAG
[ENA]
¡û
Identical group No.176430 (1 seq.)
>W1711413313
MGVQ01000062
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
7475
7559
+
Leu
GAG
[ENA]
¡û
Identical group No.181048 (7 seq.)
>W1711412068
MGTV01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
193426
193507
+
Leu
GAG
[ENA]
¡û
>W1711412107
MGTW01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
5372
5455
+
Leu
GAG
[ENA]
¡û
>W1711412243
MGTZ01000046
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
4955
5038
+
Leu
GAG
[ENA]
¡û
>W1711412267
MGUA01000012
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
46353
46434
+
Leu
GAG
[ENA]
¡û
>W1711412434
MGUF01000023
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
4160
4241
+
Leu
GAG
[ENA]
¡û
>W1711412485
MGUG01000053
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
21316
21235
-
Leu
GAG
[ENA]
¡û
>W1711412535
MGUI01000011
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
4041
4122
+
Leu
GAG
[ENA]
¡û
Identical group No.181049 (4 seq.)
>W1711411998
MGTT01000016
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
87651
87732
+
Leu
GAG
[ENA]
¡û
>W1711412335
MGUC01000012
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
150448
150367
-
Leu
GAG
[ENA]
¡û
>W1711412771
MGVA01000032
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
10876
10795
-
Leu
GAG
[ENA]
¡û
>W1711412975
MGVG01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
7339
7420
+
Leu
GAG
[ENA]
¡û
Identical group No.182306 (3 seq.)
>C08011148
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
221368
221285
-
Leu
GAG
-
¡û
>C181002105
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
217617
217534
-
Leu
GAG
-
¡û
>ENV000849
AP009510
Environmental sample from ENV division of INSDC
221368
221282
-
Leu
GAG
[ENA]
Identical group No.182317 (2 seq.)
>C08004678
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
420798
420717
-
Leu
GAG
[Ensembl]
¡û
>W09107472
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
431109
431028
-
Leu
GAG
[ENA]
¡û
Identical group No.189118 (6 seq.)
>W1712038726
NFJD01000002
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
416
335
-
Leu
GAG
[ENA]
¡û
>WENV181691248
OGOZ01003969
[OGOZ] human gut metagenome; faeces
4376
4295
-
Leu
GAG
[ENA]
¢þ
>WENV182658405
OJML01000001
[OJML] human gut metagenome; feces
22996
23077
+
Leu
GAG
[ENA]
¢þ
>WENV183070594
OLIS01000082
[OLIS] human gut metagenome; feces
4530
4611
+
Leu
GAG
[ENA]
¢þ
>WENV183645999
OQVQ01057092
[OQVQ] human gut metagenome; human gut
77
158
+
Leu
GAG
[ENA]
¢þ
>WENV183650152
OQVT01012119
[OQVT] human gut metagenome; human gut
1868
1949
+
Leu
GAG
[ENA]
¢þ
Identical group No.190601 (3 seq.)
>W1711412049
MGTU01000025
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
5308
5391
+
Leu
GAG
[ENA]
¡û
>W1711412412
MGUE01000039
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
4896
4979
+
Leu
GAG
[ENA]
¡û
>W1711581898
MNUR01000083
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
13086
13169
+
Leu
GAG
[ENA]
¡û
Identical group No.190612 (1 seq.)
>W1711413026
MGVH01000055
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
851
934
+
Leu
GAG
[ENA]
¡û
Identical group No.194001 (2 seq.)
>W1711411963
MGTS01000029
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
45993
45912
-
Leu
GAG
[ENA]
¡û
>W1711412575
MGUJ01000017
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
4837
4756
-
Leu
GAG
[ENA]
¡û
Identical group No.196284 (6 seq.)
>W1711412714
MGUY01000150
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
10708
10791
+
Leu
GAG
[ENA]
¡û
>W1711412716
MGUZ01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
10493
10410
-
Leu
GAG
[ENA]
¡û
>W1711412901
MGVE01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
10522
10439
-
Leu
GAG
[ENA]
¡û
>W1711413062
MGVJ01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
957
874
-
Leu
GAG
[ENA]
¡û
>W1711413094
MGVK01000005
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
10524
10441
-
Leu
GAG
[ENA]
¡û
>W1711413123
MGVL01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
10522
10439
-
Leu
GAG
[ENA]
¡û
Identical group No.198927 (1 seq.)
>W1711412619
MGUK01000044
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
26151
26068
-
Leu
GAG
[ENA]
¡û
Identical group No.199024 (2 seq.)
>W1710917300
LNVX01000314
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
8955
8872
-
Leu
GAG
[ENA]
¡û
>WENV170715646
LQAB01009045
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
59304
59387
+
Leu
GAG
[ENA]
¢þ
Identical group No.199026 (3 seq.)
>W1710917241
LNVX01000012
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1937
1854
-
Leu
GAG
[ENA]
¡û
>WENV170715681
LQAB01010819
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
91
174
+
Leu
GAG
[ENA]
¢þ
>C151052998
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
131352
131433
+
Leu
GAG
[Ensembl]
¡û
Identical group No.203190 (2 seq.)
>W1711412952
MGVF01000066
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
4393
4476
+
Leu
GAG
[ENA]
¡û
>W1711413249
MGVO01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
4330
4413
+
Leu
GAG
[ENA]
¡û
Identical group No.204466 (2 seq.)
>W1910727554
MGUM01000098
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
21316
21398
+
Leu
GAG
[ENA]
¡û
>W1910727801
MGUT01000070
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
11721
11803
+
Leu
GAG
[ENA]
¡û
Identical group No.206497 (2 seq.)
>W1910727680
MGUQ01000020
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
3589
3508
-
Leu
GAG
[ENA]
¡û
>W1910727753
MGUS01000028
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
6049
6130
+
Leu
GAG
[ENA]
¡û
Identical group No.210000 (1 seq.)
>W1910727668
MGUP01000997
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
318
235
-
Leu
GAG
[ENA]
¡û
Identical group No.210001 (1 seq.)
>W1910727740
MGUR01000060
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
17708
17624
-
Leu
GAG
[ENA]
¡û
Identical group No.210326 (1 seq.)
>W1711581927
MNUS01000060
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
45186
45100
-
Leu
GAG
[ENA]
¡û
Identical group No.213343 (1 seq.)
>W1711583344
MNXB01000078
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
5742
5825
+
Leu
GAG
[ENA]
¡û
Identical group No.215662 (1 seq.)
>W1711413282
MGVP01000220
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
555
636
+
Leu
GAG
[ENA]
¡û
Identical group No.219520 (5 seq.)
>W1711411905
MGTR01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
10640
10720
+
Leu
GAG
[ENA]
¡û
>WENV180256612
OBEQ010835320
[OBEQ] groundwater metagenome; groundwater
1212
1294
+
Leu
GAG
[ENA]
¢þ
>W1910727572
MGUN01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
12916
12836
-
Leu
GAG
[ENA]
¡û
>W1910727817
MGUU01000009
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
12914
12834
-
Leu
GAG
[ENA]
¡û
>W1910727880
MGUW01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
14107
14027
-
Leu
GAG
[ENA]
¡û
Identical group No.222947 (1 seq.)
>W1910727928
MGUX01000102
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
1039
957
-
Leu
GAG
[ENA]
¡û
Identical group No.613459 (1 seq.)
>W1711581920
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
6503
6578
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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