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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GAT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241322 (1 seq.)
>W1730028199
MGVC01000051
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
2989
2915
-
Ile
GAT
[ENA]
¡û
Identical group No.281507 (4 seq.)
>C08012699
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
129959
130035
+
Ile
GAT
-
¡û
>C183000067
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
128351
128425
+
Ile
GAT
-
¡û
>C153000696
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1529185
1529261
+
Ile
GAT
[Ensembl]
¡û
>W1730016706
LNVX01000212
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3486
3562
+
Ile
GAT
[ENA]
¡û
Identical group No.282871 (2 seq.)
>C08004668
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1535022
1534947
-
Ile
GAT
[Ensembl]
¡û
>W09107451
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
98300
98375
+
Ile
GAT
[ENA]
¡û
Identical group No.298293 (4 seq.)
>W1910727563
MGUN01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
1348
1274
-
Ile
GAT
[ENA]
¡û
>W1910727848
MGUU01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
8044
7970
-
Ile
GAT
[ENA]
¡û
>W1910727876
MGUW01000005
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
1410
1336
-
Ile
GAT
[ENA]
¡û
>WENV069605
AACY023774818
Marine microbial communities from Global Ocean Sampling (GOS)
954
878
-
Ile
GAT
[ENA]
Identical group No.311830 (11 seq.)
>W1711413293
MGVP01000698
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
33
109
+
Ile
GAT
[ENA]
¡û
>W1711506519
MKWL01000024
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
3444
3368
-
Ile
GAT
[ENA]
¡û
>W131168101
ARDU01000017
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
1760
1836
+
Ile
GAT
[ENA]
¡û
>C025386
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
479682
479758
+
Ile
GAT
[Ensembl]
¡û
>C025404
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1863844
1863768
-
Ile
GAT
[Ensembl]
¡û
>WENV180295313
OBIZ01060935
[OBIZ] soil metagenome; soil
383
307
-
Ile
GAT
[ENA]
¢þ
>WENV180311337
OBJT01231627
[OBJT] soil metagenome; soil
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180351148
OBLQ010028909
[OBLQ] soil metagenome; soil
194
270
+
Ile
GAT
[ENA]
¢þ
>WENV181191965
OEPS010312929
[OEPS] soil metagenome; soil
119
195
+
Ile
GAT
[ENA]
¢þ
>WENV181293851
OFHG01030620
[OFHG] soil metagenome; Clay
966
1042
+
Ile
GAT
[ENA]
¢þ
>W09101559
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
38362
38438
+
Ile
GAT
[ENA]
¡û
Identical group No.315516 (10 seq.)
>W1712038745
NFJD01000005
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
26115
26189
+
Ile
GAT
[ENA]
¡û
>WENV180231064
OBCN01000307
[OBCN] human gut metagenome; human gut
6909
6835
-
Ile
GAT
[ENA]
¢þ
>WENV181647809
OGNQ01000840
[OGNQ] metagenome; Human gut stool
214
288
+
Ile
GAT
[ENA]
¢þ
>WENV181691567
OGOZ01011452
[OGOZ] human gut metagenome; faeces
2570
2496
-
Ile
GAT
[ENA]
¢þ
>WENV182659132
OJML01004464
[OJML] human gut metagenome; feces
1891
1965
+
Ile
GAT
[ENA]
¢þ
>WENV183070584
OLIS01000071
[OLIS] human gut metagenome; feces
67927
67853
-
Ile
GAT
[ENA]
¢þ
>WENV183641125
OQVL01021012
[OQVL] human gut metagenome; human gut
2794
2720
-
Ile
GAT
[ENA]
¢þ
>WENV183643102
OQVO01001520
[OQVO] human gut metagenome; human gut
4355
4281
-
Ile
GAT
[ENA]
¢þ
>WENV183645734
OQVQ01022979
[OQVQ] human gut metagenome; human gut
214
288
+
Ile
GAT
[ENA]
¢þ
>WENV183657258
OQWI01005771
[OQWI] human gut metagenome; human gut
1398
1324
-
Ile
GAT
[ENA]
¢þ
Identical group No.361945 (1 seq.)
>W1711413196
MGVN01000036
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
14096
14023
-
Ile
GAT
[ENA]
¡û
Identical group No.391763 (4 seq.)
>W1630016080
LQAA01000040
Thermodesulfobacteriota
Candidatus Adiutrix intracellularis [LQAA]
2401
2477
+
Ile
GAT
[ENA]
¡û
>W1730016707
LNVX01000213
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
13987
14063
+
Ile
GAT
[ENA]
¡û
>W1730016708
LNVX01000294
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1318
1394
+
Ile
GAT
[ENA]
¡û
>W1730018378
LQAA01000040
Thermodesulfobacteriota
Candidatus Adiutrix intracellularis [LQAA]
2401
2477
+
Ile
GAT
[ENA]
¡û
Identical group No.407605 (2 seq.)
>W1730028207
MGVJ01000075
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
6288
6214
-
Ile
GAT
[ENA]
¡û
>W1730028211
MGVK01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
61371
61445
+
Ile
GAT
[ENA]
¡û
Identical group No.414660 (1 seq.)
>W1910727743
MGUR01000062
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
16408
16333
-
Ile
GAT
[ENA]
¡û
Identical group No.429514 (1 seq.)
>W1730031958
MNXB01000105
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
16828
16901
+
Ile
GAT
[ENA]
¡û
Identical group No.686896 (7 seq.)
>W1711412191
MGTY01000053
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
17100
17028
-
Ile
GAT
[ENA]
¡û
>W1711413330
MGVR01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
12050
11979
-
Ile
GAT
[ENA]
¡û
>WENV180257606
OBEQ010925948
[OBEQ] groundwater metagenome; groundwater
736
807
+
Ile
GAT
[ENA]
¢þ
>WENV180259536
OBEQ011112917
[OBEQ] groundwater metagenome; groundwater
4
75
+
Ile
GAT
[ENA]
¢þ
>WENV180260680
OBEQ011219899
[OBEQ] groundwater metagenome; groundwater
217
288
+
Ile
GAT
[ENA]
¢þ
>WENV183694741
ORMF012283474
[ORMF] groundwater metagenome; groundwater
3
74
+
Ile
GAT
[ENA]
¢þ
>WENV170577374
FRDC01005002
[FRDC] freshwater metagenome; water
727
798
+
Ile
GAT
[ENA]
¢þ
Identical group No.687069 (1 seq.)
>W1711581892
MNUR01000070
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
3266
3193
-
Ile
GAT
[ENA]
¡û
Identical group No.750090 (3 seq.)
>WENV180272120
OBEQ012347140
[OBEQ] groundwater metagenome; groundwater
42
115
+
Ile
GAT
[ENA]
¢þ
>WENV183677189
ORJL011723681
[ORJL] groundwater metagenome; groundwater
445
518
+
Ile
GAT
[ENA]
¢þ
>W1910727636
MGUP01000120
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
22933
22860
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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