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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GCA
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276679 (5 seq.)
>W1711412166
MGTX01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
92237
92313
+
Cys
GCA
[ENA]
¡û
>W1711412525
MGUH01000115
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
6330
6254
-
Cys
GCA
[ENA]
¡û
>WENV183688334
ORMF011276524
[ORMF] groundwater metagenome; groundwater
279
204
-
Cys
GCA
[ENA]
¢þ
>WENV183691418
ORMF011759147
[ORMF] groundwater metagenome; groundwater
509
434
-
Cys
GCA
[ENA]
¢þ
>WENV183695215
ORMF012353510
[ORMF] groundwater metagenome; groundwater
677
602
-
Cys
GCA
[ENA]
¢þ
Identical group No.298295 (5 seq.)
>WENV180251212
OBEQ010349237
[OBEQ] groundwater metagenome; groundwater
2595
2522
-
Cys
GCA
[ENA]
¢þ
>WENV183686568
ORMF011021548
[ORMF] groundwater metagenome; groundwater
779
853
+
Cys
GCA
[ENA]
¢þ
>W1910727574
MGUN01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
322089
322162
+
Cys
GCA
[ENA]
¡û
>W1910727819
MGUU01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
322080
322153
+
Cys
GCA
[ENA]
¡û
>W1910727891
MGUW01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
322092
322165
+
Cys
GCA
[ENA]
¡û
Identical group No.322655 (1 seq.)
>W1711412190
MGTY01000044
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
38099
38172
+
Cys
GCA
[ENA]
¡û
Identical group No.373142 (4 seq.)
>W1711412679
MGUL01000171
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
26599
26523
-
Cys
GCA
[ENA]
¡û
>W1711413358
MGVR01000570
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
2138
2062
-
Cys
GCA
[ENA]
¡û
>WENV180253142
OBEQ010510579
[OBEQ] groundwater metagenome; groundwater
131
207
+
Cys
GCA
[ENA]
¢þ
>WENV170556083
CXWL01004670
[CXWL] groundwater metagenome; biofilm material
71245
71169
-
Cys
GCA
[ENA]
¢þ
Identical group No.397836 (3 seq.)
>WENV180263459
OBEQ011476964
[OBEQ] groundwater metagenome; groundwater
129
53
-
Cys
GCA
[ENA]
¢þ
>WENV180263767
OBEQ011504424
[OBEQ] groundwater metagenome; groundwater
294
370
+
Cys
GCA
[ENA]
¢þ
>W1910727695
MGUQ01000068
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
7977
7901
-
Cys
GCA
[ENA]
¡û
Identical group No.415188 (1 seq.)
>C151053019
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1309769
1309842
+
Cys
GCA
[Ensembl]
¡û
Identical group No.416397 (1 seq.)
>W1711581933
MNUS01000097
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
10335
10259
-
Cys
GCA
[ENA]
¡û
Identical group No.428494 (1 seq.)
>W1910727794
MGUT01000047
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
9618
9691
+
Cys
GCA
[ENA]
¡û
Identical group No.439040 (1 seq.)
>W1910727759
MGUS01000039
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
486
413
-
Cys
GCA
[ENA]
¡û
Identical group No.450960 (1 seq.)
>W1910727618
MGUO01000187
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
5728
5652
-
Cys
GCA
[ENA]
¡û
Identical group No.539213 (5 seq.)
>W1711412708
MGUY01000137
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
14274
14346
+
Cys
GCA
[ENA]
¡û
>W1711412749
MGUZ01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
26218
26290
+
Cys
GCA
[ENA]
¡û
>W1711412934
MGVE01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
39034
39106
+
Cys
GCA
[ENA]
¡û
>W1711413070
MGVJ01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
70723
70651
-
Cys
GCA
[ENA]
¡û
>W1711413159
MGVL01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
38698
38770
+
Cys
GCA
[ENA]
¡û
Identical group No.611625 (1 seq.)
>W1910727739
MGUR01000060
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
17887
17812
-
Cys
GCA
[ENA]
¡û
Identical group No.628921 (1 seq.)
>W1711583356
MNXB01000117
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17551
17479
-
Cys
GCA
[ENA]
¡û
Identical group No.656767 (6 seq.)
>W1711411958
MGTS01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
205304
205233
-
Cys
GCA
[ENA]
¡û
>W1711412078
MGTV01000015
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
9306
9377
+
Cys
GCA
[ENA]
¡û
>W1711412310
MGUB01000065
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
13639
13710
+
Cys
GCA
[ENA]
¡û
>W1711412462
MGUG01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
2077
2006
-
Cys
GCA
[ENA]
¡û
>W1711412564
MGUI01000052
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
45158
45229
+
Cys
GCA
[ENA]
¡û
>W1711412602
MGUJ01000136
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
11831
11760
-
Cys
GCA
[ENA]
¡û
Identical group No.656781 (2 seq.)
>W1711412764
MGVA01000022
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
38284
38355
+
Cys
GCA
[ENA]
¡û
>W1711412974
MGVG01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
38304
38375
+
Cys
GCA
[ENA]
¡û
Identical group No.656794 (2 seq.)
>W1711412835
MGVC01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
163287
163214
-
Cys
GCA
[ENA]
¡û
>W1711412893
MGVD01000111
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
803
732
-
Cys
GCA
[ENA]
¡û
Identical group No.660423 (3 seq.)
>W1711412635
MGUK01000088
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
29929
29858
-
Cys
GCA
[ENA]
¡û
>C08004685
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
11031
10960
-
Cys
GCA
[Ensembl]
¡û
>W09107479
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
21316
21245
-
Cys
GCA
[ENA]
¡û
Identical group No.660453 (8 seq.)
>W1710917323
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
20225
20154
-
Cys
GCA
[ENA]
¡û
>C08011140
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
747457
747386
-
Cys
GCA
-
¡û
>WENV170715566
LQAB01005864
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1574
1503
-
Cys
GCA
[ENA]
¢þ
>WENV170715874
LQAB01018545
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
542
471
-
Cys
GCA
[ENA]
¢þ
>WENV170715887
LQAB01018930
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
7231
7160
-
Cys
GCA
[ENA]
¢þ
>C181002097
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
737853
737782
-
Cys
GCA
-
¡û
>C151053010
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
524843
524914
+
Cys
GCA
[Ensembl]
¡û
>ENV000868
AP009510
Environmental sample from ENV division of INSDC
747457
747383
-
Cys
GCA
[ENA]
Identical group No.684873 (9 seq.)
>W1711412046
MGTU01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
85182
85111
-
Cys
GCA
[ENA]
¡û
>W1711412374
MGUD01000004
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
42679
42608
-
Cys
GCA
[ENA]
¡û
>W1711412409
MGUE01000029
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
85173
85102
-
Cys
GCA
[ENA]
¡û
>W1711412809
MGVB01000055
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
29617
29688
+
Cys
GCA
[ENA]
¡û
>W1711413031
MGVH01000068
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
33890
33961
+
Cys
GCA
[ENA]
¡û
>W1711581873
MNUR01000008
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
45117
45046
-
Cys
GCA
[ENA]
¡û
>WENV183668941
ORJL010790080
[ORJL] groundwater metagenome; groundwater
1647
1718
+
Cys
GCA
[ENA]
¢þ
>WENV183693499
ORMF012090955
[ORMF] groundwater metagenome; groundwater
695
766
+
Cys
GCA
[ENA]
¢þ
>W1910727866
MGUV01000109
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
1571
1642
+
Cys
GCA
[ENA]
¡û
Identical group No.713829 (2 seq.)
>W1710917329
LNVX01000450
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
459
388
-
Cys
GCA
[ENA]
¡û
>WENV170715829
LQAB01016855
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
580
651
+
Cys
GCA
[ENA]
¢þ
Identical group No.720991 (3 seq.)
>W1711412118
MGTW01000041
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
38615
38544
-
Cys
GCA
[ENA]
¡û
>W1711412227
MGTZ01000023
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
45909
45980
+
Cys
GCA
[ENA]
¡û
>W1711412263
MGUA01000007
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
55724
55795
+
Cys
GCA
[ENA]
¡û
Identical group No.727678 (2 seq.)
>W1711411995
MGTT01000015
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
177111
177182
+
Cys
GCA
[ENA]
¡û
>W1711412359
MGUC01000031
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
62298
62227
-
Cys
GCA
[ENA]
¡û
Identical group No.740749 (1 seq.)
>W1712038718
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
571070
570999
-
Cys
GCA
[ENA]
¡û
Identical group No.752083 (1 seq.)
>W1711413173
MGVM01000091
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
6520
6449
-
Cys
GCA
[ENA]
¡û
Identical group No.757049 (1 seq.)
>W1711413389
MGVS01000083
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
17487
17416
-
Cys
GCA
[ENA]
¡û
Identical group No.771700 (1 seq.)
>W1711413290
MGVP01000550
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
2643
2714
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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