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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GCC
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458191 (3 seq.)
>W1711412872
MGVC01000084
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
23484
23556
+
Gly
GCC
[ENA]
¡û
>W1711412896
MGVD01000131
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
3061
3133
+
Gly
GCC
[ENA]
¡û
>W1711413167
MGVM01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
5938
5866
-
Gly
GCC
[ENA]
¡û
Identical group No.628917 (1 seq.)
>W1711583345
MNXB01000078
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
8262
8334
+
Gly
GCC
[ENA]
¡û
Identical group No.660454 (5 seq.)
>W1710917242
LNVX01000012
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1815
1744
-
Gly
GCC
[ENA]
¡û
>C08011149
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
221247
221176
-
Gly
GCC
-
¡û
>WENV170715726
LQAB01012385
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
3571
3642
+
Gly
GCC
[ENA]
¢þ
>WENV170715948
LQAB01021748
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1018
947
-
Gly
GCC
[ENA]
¢þ
>ENV000848
AP009510
Environmental sample from ENV division of INSDC
221247
221173
-
Gly
GCC
[ENA]
Identical group No.705566 (6 seq.)
>W1711412715
MGUY01000150
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
10851
10925
+
Gly
GCC
[ENA]
¡û
>W1711412717
MGUZ01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
10350
10276
-
Gly
GCC
[ENA]
¡û
>W1711412902
MGVE01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
10379
10305
-
Gly
GCC
[ENA]
¡û
>W1711413063
MGVJ01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
814
740
-
Gly
GCC
[ENA]
¡û
>W1711413095
MGVK01000005
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
10381
10307
-
Gly
GCC
[ENA]
¡û
>W1711413124
MGVL01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
10379
10305
-
Gly
GCC
[ENA]
¡û
Identical group No.713538 (1 seq.)
>W1711413206
MGVN01000081
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
10758
10684
-
Gly
GCC
[ENA]
¡û
Identical group No.713541 (3 seq.)
>W1711412953
MGVF01000066
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
4536
4607
+
Gly
GCC
[ENA]
¡û
>W1711413230
MGVN01000204
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
2866
2937
+
Gly
GCC
[ENA]
¡û
>W1711413250
MGVO01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
4473
4544
+
Gly
GCC
[ENA]
¡û
Identical group No.713817 (3 seq.)
>W1710917301
LNVX01000314
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
8833
8762
-
Gly
GCC
[ENA]
¡û
>WENV170715647
LQAB01009045
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
59426
59497
+
Gly
GCC
[ENA]
¢þ
>WENV170715756
LQAB01014017
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
252
181
-
Gly
GCC
[ENA]
¢þ
Identical group No.751515 (1 seq.)
>C151052997
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
131145
131216
+
Gly
GCC
[Ensembl]
¡û
Identical group No.757048 (1 seq.)
>W1711413388
MGVS01000083
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
18078
18007
-
Gly
GCC
[ENA]
¡û
Identical group No.775086 (1 seq.)
>C181002106
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
217497
217426
-
Gly
GCC
-
¡û
Identical group No.781004 (2 seq.)
>W1711412167
MGTX01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
42885
42812
-
Gly
GCC
[ENA]
¡û
>W1711412501
MGUH01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
5633
5560
-
Gly
GCC
[ENA]
¡û
Identical group No.781043 (1 seq.)
>W1711412470
MGUG01000027
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
108506
108579
+
Gly
GCC
[ENA]
¡û
Identical group No.781047 (2 seq.)
>W1711412784
MGVA01000043
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
146662
146592
-
Gly
GCC
[ENA]
¡û
>W1711412972
MGVG01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
19489
19559
+
Gly
GCC
[ENA]
¡û
Identical group No.782537 (2 seq.)
>C08004662
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1541033
1541103
+
Gly
GCC
[Ensembl]
¡û
>W09107459
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
92290
92220
-
Gly
GCC
[ENA]
¡û
Identical group No.787334 (4 seq.)
>W1711411907
MGTR01000014
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
2276
2206
-
Gly
GCC
[ENA]
¡û
>W1910727579
MGUN01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
2300
2230
-
Gly
GCC
[ENA]
¡û
>W1910727824
MGUU01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
2291
2221
-
Gly
GCC
[ENA]
¡û
>W1910727896
MGUW01000017
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
2303
2233
-
Gly
GCC
[ENA]
¡û
Identical group No.792359 (11 seq.)
>W1712038719
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
460534
460461
-
Gly
GCC
[ENA]
¡û
>WENV180231300
OBCN01008566
[OBCN] human gut metagenome; human gut
520
593
+
Gly
GCC
[ENA]
¢þ
>WENV181647902
OGNQ01001479
[OGNQ] metagenome; Human gut stool
4907
4980
+
Gly
GCC
[ENA]
¢þ
>WENV181691348
OGOZ01005693
[OGOZ] human gut metagenome; faeces
2524
2597
+
Gly
GCC
[ENA]
¢þ
>WENV182658440
OJML01000011
[OJML] human gut metagenome; feces
41533
41606
+
Gly
GCC
[ENA]
¢þ
>WENV183070571
OLIS01000058
[OLIS] human gut metagenome; feces
29885
29812
-
Gly
GCC
[ENA]
¢þ
>WENV183640075
OQVL01001055
[OQVL] human gut metagenome; human gut
11150
11077
-
Gly
GCC
[ENA]
¢þ
>WENV183642959
OQVO01000297
[OQVO] human gut metagenome; human gut
9334
9261
-
Gly
GCC
[ENA]
¢þ
>WENV183645161
OQVQ01001312
[OQVQ] human gut metagenome; human gut
9699
9772
+
Gly
GCC
[ENA]
¢þ
>WENV183649749
OQVT01004847
[OQVT] human gut metagenome; human gut
233
306
+
Gly
GCC
[ENA]
¢þ
>WENV183654231
OQWA01016653
[OQWA] human gut metagenome; human gut
291
218
-
Gly
GCC
[ENA]
¢þ
Identical group No.794454 (12 seq.)
>W1711411960
MGTS01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
8424
8351
-
Gly
GCC
[ENA]
¡û
>W1711412004
MGTT01000024
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
13963
14036
+
Gly
GCC
[ENA]
¡û
>W1711412025
MGTU01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
99997
100070
+
Gly
GCC
[ENA]
¡û
>W1711412266
MGUA01000008
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
61610
61683
+
Gly
GCC
[ENA]
¡û
>W1711412347
MGUC01000019
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
5188
5115
-
Gly
GCC
[ENA]
¡û
>W1711412383
MGUD01000019
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
34217
34290
+
Gly
GCC
[ENA]
¡û
>W1711412402
MGUE01000023
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
99991
100064
+
Gly
GCC
[ENA]
¡û
>W1711412544
MGUI01000030
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
585
658
+
Gly
GCC
[ENA]
¡û
>W1711412574
MGUJ01000009
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
31
104
+
Gly
GCC
[ENA]
¡û
>W1711412829
MGVB01000170
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
17748
17821
+
Gly
GCC
[ENA]
¡û
>W1711413041
MGVH01000115
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
45581
45508
-
Gly
GCC
[ENA]
¡û
>W1711581896
MNUR01000077
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
183
110
-
Gly
GCC
[ENA]
¡û
Identical group No.794474 (6 seq.)
>W1711412072
MGTV01000010
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
138595
138668
+
Gly
GCC
[ENA]
¡û
>W1711412130
MGTW01000066
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
49809
49736
-
Gly
GCC
[ENA]
¡û
>W1711412215
MGTZ01000002
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
130517
130590
+
Gly
GCC
[ENA]
¡û
>W1711412216
MGTZ01000002
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
130690
130763
+
Gly
GCC
[ENA]
¡û
>W1711412432
MGUF01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
71
144
+
Gly
GCC
[ENA]
¡û
>WENV181231155
OFEK01011459
[OFEK] activated sludge metagenome; Anaerobic digester
2590
2517
-
Gly
GCC
[ENA]
¢þ
Identical group No.805816 (1 seq.)
>W1910727926
MGUX01000085
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
4470
4543
+
Gly
GCC
[ENA]
¡û
Identical group No.809881 (5 seq.)
>W1711412668
MGUL01000107
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
6103
6030
-
Gly
GCC
[ENA]
¡û
>W1711413333
MGVR01000043
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
1962
1889
-
Gly
GCC
[ENA]
¡û
>WENV180272237
OBEQ012359399
[OBEQ] groundwater metagenome; groundwater
21255
21328
+
Gly
GCC
[ENA]
¢þ
>WENV183682410
ORMF010434847
[ORMF] groundwater metagenome; groundwater
200
130
-
Gly
GCC
[ENA]
¢þ
>W1910727604
MGUO01000033
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
2028
1955
-
Gly
GCC
[ENA]
¡û
Identical group No.815144 (2 seq.)
>W1910727545
MGUM01000070
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
1702
1632
-
Gly
GCC
[ENA]
¡û
>W1910727790
MGUT01000032
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
17220
17290
+
Gly
GCC
[ENA]
¡û
Identical group No.818214 (1 seq.)
>W1910727708
MGUQ01000127
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
1593
1520
-
Gly
GCC
[ENA]
¡û
Identical group No.822872 (3 seq.)
>WENV183668563
ORJL010752931
[ORJL] groundwater metagenome; groundwater
1000
927
-
Gly
GCC
[ENA]
¢þ
>WENV183683086
ORMF010527613
[ORMF] groundwater metagenome; groundwater
155
228
+
Gly
GCC
[ENA]
¢þ
>W1910727651
MGUP01000714
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
497
570
+
Gly
GCC
[ENA]
¡û
Identical group No.823822 (1 seq.)
>W1910727741
MGUR01000060
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
17578
17506
-
Gly
GCC
[ENA]
¡û
Identical group No.824321 (1 seq.)
>W1711581954
MNUS01000240
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
31464
31391
-
Gly
GCC
[ENA]
¡û
Identical group No.833262 (1 seq.)
>W1910727750
MGUS01000003
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
8347
8417
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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