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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GCG
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656684 (2 seq.)
>W1711412159
MGTX01000007
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
3904
3977
+
Arg
GCG
[ENA]
¡û
>W1711412507
MGUH01000061
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
3002
2929
-
Arg
GCG
[ENA]
¡û
Identical group No.656763 (1 seq.)
>W1711412451
MGUG01000002
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
4687
4613
-
Arg
GCG
[ENA]
¡û
Identical group No.660420 (2 seq.)
>C08004656
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
958990
959064
+
Arg
GCG
[Ensembl]
¡û
>W09107480
ABIQ01000003
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
114539
114613
+
Arg
GCG
[ENA]
¡û
Identical group No.673791 (2 seq.)
>W1711411961
MGTS01000024
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
8765
8691
-
Arg
GCG
[ENA]
¡û
>W1711412321
MGUB01000110
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
454
528
+
Arg
GCG
[ENA]
¡û
Identical group No.682111 (10 seq.)
>W1712038729
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
194523
194597
+
Arg
GCG
[ENA]
¡û
>WENV180231257
OBCN01005302
[OBCN] human gut metagenome; human gut
1194
1120
-
Arg
GCG
[ENA]
¢þ
>WENV181647570
OGNQ01000109
[OGNQ] metagenome; Human gut stool
24055
24129
+
Arg
GCG
[ENA]
¢þ
>WENV182658413
OJML01000003
[OJML] human gut metagenome; feces
43193
43119
-
Arg
GCG
[ENA]
¢þ
>WENV183070527
OLIS01000010
[OLIS] human gut metagenome; feces
44251
44177
-
Arg
GCG
[ENA]
¢þ
>WENV183639867
OQVL01000093
[OQVL] human gut metagenome; human gut
2002
1928
-
Arg
GCG
[ENA]
¢þ
>WENV183643162
OQVO01002542
[OQVO] human gut metagenome; human gut
2072
2146
+
Arg
GCG
[ENA]
¢þ
>WENV183645597
OQVQ01013541
[OQVQ] human gut metagenome; human gut
1329
1401
+
Arg
GCG
[ENA]
¢þ
>WENV183654567
OQWA01069538
[OQWA] human gut metagenome; human gut
162
90
-
Arg
GCG
[ENA]
¢þ
>WENV183657193
OQWI01004208
[OQWI] human gut metagenome; human gut
2280
2208
-
Arg
GCG
[ENA]
¢þ
Identical group No.686890 (4 seq.)
>W1711412039
MGTU01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
28184
28258
+
Arg
GCG
[ENA]
¡û
>W1711412411
MGUE01000037
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
9358
9432
+
Arg
GCG
[ENA]
¡û
>WENV183665754
ORJL010489152
[ORJL] groundwater metagenome; groundwater
1721
1647
-
Arg
GCG
[ENA]
¢þ
>W1910727642
MGUP01000232
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
1933
2007
+
Arg
GCG
[ENA]
¡û
Identical group No.686895 (1 seq.)
>W1711412189
MGTY01000044
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
32640
32711
+
Arg
GCG
[ENA]
¡û
Identical group No.686932 (5 seq.)
>W1711412089
MGTV01000037
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
9373
9447
+
Arg
GCG
[ENA]
¡û
>W1711412116
MGTW01000039
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
1876
1802
-
Arg
GCG
[ENA]
¡û
>W1711412225
MGTZ01000019
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
16613
16687
+
Arg
GCG
[ENA]
¡û
>W1711412288
MGUA01000035
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
12254
12328
+
Arg
GCG
[ENA]
¡û
>W1711412438
MGUF01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
525
451
-
Arg
GCG
[ENA]
¡û
Identical group No.686936 (2 seq.)
>W1711412822
MGVB01000124
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
388
462
+
Arg
GCG
[ENA]
¡û
>W1711413040
MGVH01000109
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
28354
28280
-
Arg
GCG
[ENA]
¡û
Identical group No.686939 (1 seq.)
>W1711413050
MGVI01000153
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
1302
1376
+
Arg
GCG
[ENA]
¡û
Identical group No.687067 (1 seq.)
>W1711581877
MNUR01000032
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
30520
30594
+
Arg
GCG
[ENA]
¡û
Identical group No.712128 (1 seq.)
>W1910727920
MGUX01000037
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
13551
13624
+
Arg
GCG
[ENA]
¡û
Identical group No.713529 (2 seq.)
>W1711412629
MGUK01000080
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
21761
21686
-
Arg
GCG
[ENA]
¡û
>WENV181230342
OFEK01000688
[OFEK] activated sludge metagenome; Anaerobic digester
18020
18094
+
Arg
GCG
[ENA]
¢þ
Identical group No.721026 (2 seq.)
>W1711412647
MGUL01000030
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
10765
10692
-
Arg
GCG
[ENA]
¡û
>W1711413334
MGVR01000059
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
138
211
+
Arg
GCG
[ENA]
¡û
Identical group No.721032 (3 seq.)
>W1711411990
MGTT01000011
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
162867
162941
+
Arg
GCG
[ENA]
¡û
>W1711412329
MGUC01000003
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
162846
162920
+
Arg
GCG
[ENA]
¡û
>W1711413000
MGVG01000043
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
17189
17263
+
Arg
GCG
[ENA]
¡û
Identical group No.739870 (1 seq.)
>W1711412537
MGUI01000016
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
11800
11874
+
Arg
GCG
[ENA]
¡û
Identical group No.771697 (1 seq.)
>W1711412389
MGUD01000029
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
44961
44887
-
Arg
GCG
[ENA]
¡û
Identical group No.779136 (1 seq.)
>W1910727616
MGUO01000174
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
1595
1666
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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