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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GGA
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15934 (1 seq.)
>W1711413228
MGVN01000202
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
16193
16284
+
Ser
GGA
[ENA]
¡û
Identical group No.30781 (4 seq.)
>W1711411985
MGTT01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
32601
32511
-
Ser
GGA
[ENA]
¡û
>W1711412363
MGUC01000032
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
3051
2961
-
Ser
GGA
[ENA]
¡û
>W1711412774
MGVA01000033
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
51109
51020
-
Ser
GGA
[ENA]
¡û
>W1711412986
MGVG01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
44977
44888
-
Ser
GGA
[ENA]
¡û
Identical group No.33101 (2 seq.)
>W1711411950
MGTS01000017
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
64503
64592
+
Ser
GGA
[ENA]
¡û
>W1711412314
MGUB01000079
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
13959
14048
+
Ser
GGA
[ENA]
¡û
Identical group No.36411 (4 seq.)
>W1711413288
MGVP01000521
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
4866
4956
+
Ser
GGA
[ENA]
¡û
>W1711421844
MIAD01000008
Betaproteobacteria
Sideroxydans sp. GWF2_59_14 [MIAD]
12021
12111
+
Ser
GGA
[ENA]
¡û
>WENV180342535
OBLJ01042565
[OBLJ] soil metagenome; Clay
329
239
-
Ser
GGA
[ENA]
¢þ
>WENV170558995
CXWL01104959
[CXWL] groundwater metagenome; biofilm material
110
200
+
Ser
GGA
[ENA]
¢þ
Identical group No.43873 (1 seq.)
>W1711412084
MGTV01000025
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
955
866
-
Ser
GGA
[ENA]
¡û
Identical group No.43880 (1 seq.)
>W1711583333
MNXB01000033
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
35836
35925
+
Ser
GGA
[ENA]
¡û
Identical group No.46431 (1 seq.)
>W1711412158
MGTX01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
114684
114595
-
Ser
GGA
[ENA]
¡û
Identical group No.46452 (3 seq.)
>W1711412054
MGTU01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
36077
36165
+
Ser
GGA
[ENA]
¡û
>W1711412456
MGUG01000009
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
2807
2893
+
Ser
GGA
[ENA]
¡û
>W1711412546
MGUI01000035
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
57521
57433
-
Ser
GGA
[ENA]
¡û
Identical group No.47361 (4 seq.)
>C08011112
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
101024
101112
+
Ser
GGA
-
¡û
>WENV170715557
LQAB01005530
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
547
635
+
Ser
GGA
[ENA]
¢þ
>C181002069
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
100058
100146
+
Ser
GGA
-
¡û
>ENV000842
AP009510
Environmental sample from ENV division of INSDC
101024
101115
+
Ser
GGA
[ENA]
Identical group No.49277 (3 seq.)
>W1910727592
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
4372
4461
+
Ser
GGA
[ENA]
¡û
>W1910727831
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
4410
4499
+
Ser
GGA
[ENA]
¡û
>W1910727905
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
4413
4502
+
Ser
GGA
[ENA]
¡û
Identical group No.51894 (7 seq.)
>W1712038735
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
67274
67363
+
Ser
GGA
[ENA]
¡û
>WENV180404876
OBSA01076154
[OBSA] human gut metagenome; ENVO:feces
169
80
-
Ser
GGA
[ENA]
¢þ
>WENV181691633
OGOZ01014267
[OGOZ] human gut metagenome; faeces
1068
1157
+
Ser
GGA
[ENA]
¢þ
>WENV182658416
OJML01000006
[OJML] human gut metagenome; feces
50141
50230
+
Ser
GGA
[ENA]
¢þ
>WENV183070549
OLIS01000038
[OLIS] human gut metagenome; feces
44401
44490
+
Ser
GGA
[ENA]
¢þ
>WENV183645312
OQVQ01003628
[OQVQ] human gut metagenome; human gut
4179
4090
-
Ser
GGA
[ENA]
¢þ
>WENV183657450
OQWI01012481
[OQWI] human gut metagenome; human gut
368
457
+
Ser
GGA
[ENA]
¢þ
Identical group No.52504 (3 seq.)
>WENV183663655
ORJL010303800
[ORJL] groundwater metagenome; groundwater
37
126
+
Ser
GGA
[ENA]
¢þ
>W1910727649
MGUP01000581
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
389
478
+
Ser
GGA
[ENA]
¡û
>W1910727864
MGUV01000106
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
5613
5524
-
Ser
GGA
[ENA]
¡û
Identical group No.52956 (2 seq.)
>W1711412814
MGVB01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
4916
5004
+
Ser
GGA
[ENA]
¡û
>W1711413025
MGVH01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
26936
26848
-
Ser
GGA
[ENA]
¡û
Identical group No.52981 (1 seq.)
>W1711581889
MNUR01000067
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
4736
4824
+
Ser
GGA
[ENA]
¡û
Identical group No.58527 (1 seq.)
>W1711411914
MGTR01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
979
1068
+
Ser
GGA
[ENA]
¡û
Identical group No.58531 (2 seq.)
>W1711412274
MGUA01000023
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
46414
46326
-
Ser
GGA
[ENA]
¡û
>W1711412612
MGUK01000037
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
29451
29362
-
Ser
GGA
[ENA]
¡û
Identical group No.58533 (1 seq.)
>W1711412900
MGVD01000172
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
363
451
+
Ser
GGA
[ENA]
¡û
Identical group No.58592 (2 seq.)
>W1710917307
LNVX01000344
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
17143
17231
+
Ser
GGA
[ENA]
¡û
>WENV170715776
LQAB01014916
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
697
609
-
Ser
GGA
[ENA]
¢þ
Identical group No.58595 (3 seq.)
>W1710917319
LNVX01000405
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2171
2259
+
Ser
GGA
[ENA]
¡û
>W1710917321
LNVX01000418
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1729
1817
+
Ser
GGA
[ENA]
¡û
>WENV170715846
LQAB01017418
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
624
536
-
Ser
GGA
[ENA]
¢þ
Identical group No.58597 (2 seq.)
>W1710917273
LNVX01000247
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
4020
4108
+
Ser
GGA
[ENA]
¡û
>WENV170715851
LQAB01017591
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
37863
37775
-
Ser
GGA
[ENA]
¢þ
Identical group No.60214 (1 seq.)
>W1711412664
MGUL01000096
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
2368
2279
-
Ser
GGA
[ENA]
¡û
Identical group No.61552 (2 seq.)
>W1711412108
MGTW01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
35037
35124
+
Ser
GGA
[ENA]
¡û
>W1711412231
MGTZ01000030
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
34600
34686
+
Ser
GGA
[ENA]
¡û
Identical group No.61560 (2 seq.)
>W1711412943
MGVF01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
13943
13855
-
Ser
GGA
[ENA]
¡û
>W1711413272
MGVO01000107
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
40542
40630
+
Ser
GGA
[ENA]
¡û
Identical group No.64068 (1 seq.)
>W1910727678
MGUQ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
11904
11993
+
Ser
GGA
[ENA]
¡û
Identical group No.66681 (1 seq.)
>W1910727718
MGUR01000009
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
42735
42646
-
Ser
GGA
[ENA]
¡û
Identical group No.66770 (1 seq.)
>C151053018
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1187129
1187217
+
Ser
GGA
[Ensembl]
¡û
Identical group No.66903 (1 seq.)
>W1711413180
MGVM01000130
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
2186
2274
+
Ser
GGA
[ENA]
¡û
Identical group No.67883 (1 seq.)
>W1711413375
MGVS01000058
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
13449
13535
+
Ser
GGA
[ENA]
¡û
Identical group No.71027 (1 seq.)
>W1711412369
MGUD01000001
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
8680
8768
+
Ser
GGA
[ENA]
¡û
Identical group No.72599 (1 seq.)
>W1910727606
MGUO01000075
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
5252
5164
-
Ser
GGA
[ENA]
¡û
Identical group No.73409 (2 seq.)
>C08004680
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
267587
267502
-
Ser
GGA
[Ensembl]
¡û
>W09107474
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
277882
277797
-
Ser
GGA
[ENA]
¡û
Identical group No.102101 (3 seq.)
>W1711412746
MGUZ01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
94456
94370
-
Ser
GGA
[ENA]
¡û
>W1711412905
MGVE01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
69143
69229
+
Ser
GGA
[ENA]
¡û
>W1711413130
MGVL01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
69135
69221
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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