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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GGG
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282934 (7 seq.)
>W1710917244
LNVX01000036
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
920
846
-
Pro
GGG
[ENA]
¡û
>W1710917302
LNVX01000314
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
4681
4606
-
Pro
GGG
[ENA]
¡û
>C08011150
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
217128
217053
-
Pro
GGG
-
¡û
>WENV170715648
LQAB01009045
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
63589
63664
+
Pro
GGG
[ENA]
¢þ
>WENV170715797
LQAB01015516
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
622
547
-
Pro
GGG
[ENA]
¢þ
>C181002107
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
213378
213303
-
Pro
GGG
-
¡û
>ENV000847
AP009510
Environmental sample from ENV division of INSDC
217128
217050
-
Pro
GGG
[ENA]
Identical group No.350333 (5 seq.)
>W1711412685
MGUY01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
6657
6582
-
Pro
GGG
[ENA]
¡û
>W1711412741
MGUZ01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
63596
63521
-
Pro
GGG
[ENA]
¡û
>W1711412930
MGVE01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
63589
63514
-
Pro
GGG
[ENA]
¡û
>W1711413107
MGVK01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
22917
22992
+
Pro
GGG
[ENA]
¡û
>W1711413152
MGVL01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
63494
63419
-
Pro
GGG
[ENA]
¡û
Identical group No.362322 (5 seq.)
>W1710917246
LNVX01000048
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
937
862
-
Pro
GGG
[ENA]
¡û
>WENV181231909
OFEK01085870
[OFEK] activated sludge metagenome; Anaerobic digester
450
525
+
Pro
GGG
[ENA]
¢þ
>WENV170715733
LQAB01012678
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
499
574
+
Pro
GGG
[ENA]
¢þ
>WENV170715842
LQAB01017296
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1975
1900
-
Pro
GGG
[ENA]
¢þ
>WENV170715864
LQAB01018111
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1470
1395
-
Pro
GGG
[ENA]
¢þ
Identical group No.415183 (1 seq.)
>C151053040
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
661835
661760
-
Pro
GGG
[Ensembl]
¡û
Identical group No.416309 (1 seq.)
>W1711413248
MGVO01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
13478
13551
+
Pro
GGG
[ENA]
¡û
Identical group No.423189 (1 seq.)
>W1710917245
LNVX01000039
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1319
1394
+
Pro
GGG
[ENA]
¡û
Identical group No.628918 (1 seq.)
>W1711583346
MNXB01000082
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
5254
5180
-
Pro
GGG
[ENA]
¡û
Identical group No.656680 (11 seq.)
>W1711412150
MGTX01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
126722
126796
+
Pro
GGG
[ENA]
¡û
>W1711412504
MGUH01000056
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
27997
27923
-
Pro
GGG
[ENA]
¡û
>W1711412672
MGUL01000132
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
11252
11178
-
Pro
GGG
[ENA]
¡û
>W1711413341
MGVR01000175
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
4316
4390
+
Pro
GGG
[ENA]
¡û
>WENV180023558
FTHZ01011518
[FTHZ] metagenome; soil
68
142
+
Pro
GGG
[ENA]
¢þ
>WENV180023717
FTIE01062925
[FTIE] metagenome; soil
131
57
-
Pro
GGG
[ENA]
¢þ
>WENV180024184
FTIF01159821
[FTIF] metagenome; soil
68
142
+
Pro
GGG
[ENA]
¢þ
>WENV180033046
FTKD01117609
[FTKD] metagenome; soil
125
51
-
Pro
GGG
[ENA]
¢þ
>WENV180261906
OBEQ011337016
[OBEQ] groundwater metagenome; groundwater
3311
3238
-
Pro
GGG
[ENA]
¢þ
>WENV183680230
ORMF010153044
[ORMF] groundwater metagenome; groundwater
977
1050
+
Pro
GGG
[ENA]
¢þ
>WENV170556661
CXWL01011695
[CXWL] groundwater metagenome; biofilm material
5822
5748
-
Pro
GGG
[ENA]
¢þ
Identical group No.656764 (5 seq.)
>W1711412073
MGTV01000011
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
5046
4975
-
Pro
GGG
[ENA]
¡û
>W1711412255
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
8066
8137
+
Pro
GGG
[ENA]
¡û
>W1711412393
MGUE01000010
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
6028
6099
+
Pro
GGG
[ENA]
¡û
>W1711412453
MGUG01000007
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
103360
103431
+
Pro
GGG
[ENA]
¡û
>W1711412540
MGUI01000025
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
7523
7594
+
Pro
GGG
[ENA]
¡û
Identical group No.656786 (8 seq.)
>W1711412013
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
161945
161874
-
Pro
GGG
[ENA]
¡û
>W1711412136
MGTW01000077
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
7976
8047
+
Pro
GGG
[ENA]
¡û
>W1711412249
MGTZ01000057
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
39204
39133
-
Pro
GGG
[ENA]
¡û
>W1711412340
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
73899
73970
+
Pro
GGG
[ENA]
¡û
>W1711412777
MGVA01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
10198
10271
+
Pro
GGG
[ENA]
¡û
>W1711412989
MGVG01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
10211
10284
+
Pro
GGG
[ENA]
¡û
>W1711416908
MHED01000075
Nitrospirota
Nitrospirae bacterium GWD2_57_9 [MHED]
949
878
-
Pro
GGG
[ENA]
¡û
>WENV181231212
OFEK01013827
[OFEK] activated sludge metagenome; Anaerobic digester
2337
2408
+
Pro
GGG
[ENA]
¢þ
Identical group No.656796 (1 seq.)
>W1711412840
MGVC01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
38286
38359
+
Pro
GGG
[ENA]
¡û
Identical group No.656809 (2 seq.)
>W1711413309
MGVQ01000056
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
2588
2661
+
Pro
GGG
[ENA]
¡û
>W1711413413
MGVT01000097
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
11891
11964
+
Pro
GGG
[ENA]
¡û
Identical group No.660482 (2 seq.)
>C08004657
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
976026
976100
+
Pro
GGG
[Ensembl]
¡û
>W09107481
ABIQ01000003
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
131576
131650
+
Pro
GGG
[ENA]
¡û
Identical group No.673355 (5 seq.)
>W1930015929
MGUP01000881
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
1794
1723
-
Pro
GGG
[ENA]
¡û
>W1730028159
MGTS01000014
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
58209
58136
-
Pro
GGG
[ENA]
¡û
>W1730028173
MGUB01000105
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
4073
4000
-
Pro
GGG
[ENA]
¡û
>W1730028184
MGUJ01000064
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
3691
3618
-
Pro
GGG
[ENA]
¡û
>W1730031814
MNUR01000034
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
4354
4425
+
Pro
GGG
[ENA]
¡û
Identical group No.686599 (2 seq.)
>W1730028197
MGVB01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
2217
2288
+
Pro
GGG
[ENA]
¡û
>W1730028205
MGVH01000090
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
7814
7885
+
Pro
GGG
[ENA]
¡û
Identical group No.686887 (3 seq.)
>W1711412021
MGTU01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
22584
22655
+
Pro
GGG
[ENA]
¡û
>W1711412385
MGUD01000028
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
36482
36411
-
Pro
GGG
[ENA]
¡û
>W1711412422
MGUE01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
11095
11166
+
Pro
GGG
[ENA]
¡û
Identical group No.686897 (1 seq.)
>W1711412193
MGTY01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
71901
71830
-
Pro
GGG
[ENA]
¡û
Identical group No.686941 (1 seq.)
>W1711413055
MGVI01000375
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
367
293
-
Pro
GGG
[ENA]
¡û
Identical group No.713305 (1 seq.)
>W1730028189
MGUK01000075
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
8620
8549
-
Pro
GGG
[ENA]
¡û
Identical group No.713532 (1 seq.)
>W1711412876
MGVD01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
3741
3814
+
Pro
GGG
[ENA]
¡û
Identical group No.715883 (8 seq.)
>W1712038703
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
86401
86475
+
Pro
GGG
[ENA]
¡û
>WENV180229325
OBCH01026563
[OBCH] human gut metagenome; human gut
169
243
+
Pro
GGG
[ENA]
¢þ
>WENV180404662
OBSA01024231
[OBSA] human gut metagenome; ENVO:feces
145
219
+
Pro
GGG
[ENA]
¢þ
>WENV181691345
OGOZ01005587
[OGOZ] human gut metagenome; faeces
3868
3794
-
Pro
GGG
[ENA]
¢þ
>WENV182658498
OJML01000061
[OJML] human gut metagenome; feces
37178
37104
-
Pro
GGG
[ENA]
¢þ
>WENV183070582
OLIS01000071
[OLIS] human gut metagenome; feces
26914
26988
+
Pro
GGG
[ENA]
¢þ
>WENV183642002
OQVL01120980
[OQVL] human gut metagenome; human gut
142
68
-
Pro
GGG
[ENA]
¢þ
>WENV183654121
OQWA01011071
[OQWA] human gut metagenome; human gut
1126
1052
-
Pro
GGG
[ENA]
¢þ
Identical group No.751131 (1 seq.)
>W1910727729
MGUR01000030
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
13616
13689
+
Pro
GGG
[ENA]
¡û
Identical group No.752189 (1 seq.)
>W1711581942
MNUS01000156
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
14277
14204
-
Pro
GGG
[ENA]
¡û
Identical group No.771699 (1 seq.)
>W1711413279
MGVP01000085
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
2971
2898
-
Pro
GGG
[ENA]
¡û
Identical group No.779138 (1 seq.)
>W1910727623
MGUO01000262
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
3485
3411
-
Pro
GGG
[ENA]
¡û
Identical group No.787337 (6 seq.)
>W1711411922
MGTR01000065
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
4940
4870
-
Pro
GGG
[ENA]
¡û
>W1910727550
MGUM01000081
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
12916
12846
-
Pro
GGG
[ENA]
¡û
>W1910727589
MGUN01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
124968
125038
+
Pro
GGG
[ENA]
¡û
>W1910727807
MGUT01000076
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
27414
27344
-
Pro
GGG
[ENA]
¡û
>W1910727839
MGUU01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
124965
125035
+
Pro
GGG
[ENA]
¡û
>W1910727888
MGUW01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
7705
7635
-
Pro
GGG
[ENA]
¡û
Identical group No.818209 (1 seq.)
>W1910727692
MGUQ01000061
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
5245
5316
+
Pro
GGG
[ENA]
¡û
Identical group No.818211 (3 seq.)
>WENV180267421
OBEQ011853000
[OBEQ] groundwater metagenome; groundwater
632
703
+
Pro
GGG
[ENA]
¢þ
>WENV180271594
OBEQ012294601
[OBEQ] groundwater metagenome; groundwater
359
432
+
Pro
GGG
[ENA]
¢þ
>W1910727699
MGUQ01000080
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
1657
1728
+
Pro
GGG
[ENA]
¡û
Identical group No.833264 (1 seq.)
>W1910727765
MGUS01000054
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
22
94
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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