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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GTA
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90253 (4 seq.)
>W1711411932
MGTR01000124
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
11059
11145
+
Tyr
GTA
[ENA]
¡û
>W1910727561
MGUN01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
13568
13482
-
Tyr
GTA
[ENA]
¡û
>W1910727846
MGUU01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
20264
20178
-
Tyr
GTA
[ENA]
¡û
>W1910727874
MGUW01000005
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
13630
13544
-
Tyr
GTA
[ENA]
¡û
Identical group No.102102 (2 seq.)
>W1711412962
MGVF01000135
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
29629
29713
+
Tyr
GTA
[ENA]
¡û
>W1711413262
MGVO01000086
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
36919
37003
+
Tyr
GTA
[ENA]
¡û
Identical group No.103020 (2 seq.)
>W1910727531
MGUM01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
18165
18249
+
Tyr
GTA
[ENA]
¡û
>W1910727798
MGUT01000059
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
11704
11620
-
Tyr
GTA
[ENA]
¡û
Identical group No.109047 (1 seq.)
>W1711583358
MNXB01000122
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17339
17423
+
Tyr
GTA
[ENA]
¡û
Identical group No.110446 (1 seq.)
>W1910727758
MGUS01000038
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
7517
7603
+
Tyr
GTA
[ENA]
¡û
Identical group No.113431 (6 seq.)
>W1711412109
MGTW01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
36847
36932
+
Tyr
GTA
[ENA]
¡û
>W1711412232
MGTZ01000030
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
36531
36616
+
Tyr
GTA
[ENA]
¡û
>W1711412275
MGUA01000023
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
44621
44538
-
Tyr
GTA
[ENA]
¡û
>W1711412457
MGUG01000009
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
5704
5789
+
Tyr
GTA
[ENA]
¡û
>W1711412547
MGUI01000035
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
55855
55770
-
Tyr
GTA
[ENA]
¡û
>W1711581890
MNUR01000067
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
6588
6503
-
Tyr
GTA
[ENA]
¡û
Identical group No.113440 (4 seq.)
>W1711411984
MGTT01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
32695
32612
-
Tyr
GTA
[ENA]
¡û
>W1711412362
MGUC01000032
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
3145
3062
-
Tyr
GTA
[ENA]
¡û
>W1711412773
MGVA01000033
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
51519
51436
-
Tyr
GTA
[ENA]
¡û
>W1711412985
MGVG01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
45387
45304
-
Tyr
GTA
[ENA]
¡û
Identical group No.113441 (1 seq.)
>W1711412864
MGVC01000073
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
526
441
-
Tyr
GTA
[ENA]
¡û
Identical group No.113442 (1 seq.)
>W1711413411
MGVT01000077
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
36232
36147
-
Tyr
GTA
[ENA]
¡û
Identical group No.114617 (2 seq.)
>C08004663
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1640744
1640827
+
Tyr
GTA
[Ensembl]
¡û
>W09107460
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
7467
7550
+
Tyr
GTA
[ENA]
¡û
Identical group No.118854 (3 seq.)
>W1711411973
MGTS01000039
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
48508
48593
+
Tyr
GTA
[ENA]
¡û
>W1711412315
MGUB01000094
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
4751
4836
+
Tyr
GTA
[ENA]
¡û
>W1711412587
MGUJ01000093
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
33292
33377
+
Tyr
GTA
[ENA]
¡û
Identical group No.122706 (5 seq.)
>W1711412057
MGTU01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
38257
38172
-
Tyr
GTA
[ENA]
¡û
>W1711412370
MGUD01000001
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
10729
10644
-
Tyr
GTA
[ENA]
¡û
>W1711412418
MGUE01000046
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
40484
40569
+
Tyr
GTA
[ENA]
¡û
>WENV183696226
ORMF012524427
[ORMF] groundwater metagenome; groundwater
700
615
-
Tyr
GTA
[ENA]
¢þ
>W1910727865
MGUV01000106
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
3926
3841
-
Tyr
GTA
[ENA]
¡û
Identical group No.123410 (1 seq.)
>W1711412196
MGTY01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
35939
35853
-
Tyr
GTA
[ENA]
¡û
Identical group No.123427 (2 seq.)
>W1711412815
MGVB01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
6860
6777
-
Tyr
GTA
[ENA]
¡û
>W1711413023
MGVH01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
24992
25075
+
Tyr
GTA
[ENA]
¡û
Identical group No.129774 (6 seq.)
>W1711412710
MGUY01000139
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
4276
4360
+
Tyr
GTA
[ENA]
¡û
>W1711412731
MGUZ01000010
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
64413
64497
+
Tyr
GTA
[ENA]
¡û
>W1711412918
MGVE01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
101894
101978
+
Tyr
GTA
[ENA]
¡û
>W1711413086
MGVJ01000122
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
313
397
+
Tyr
GTA
[ENA]
¡û
>W1711413091
MGVK01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
62494
62578
+
Tyr
GTA
[ENA]
¡û
>W1711413140
MGVL01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
101942
102026
+
Tyr
GTA
[ENA]
¡û
Identical group No.132014 (1 seq.)
>W1910727925
MGUX01000080
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
2107
2192
+
Tyr
GTA
[ENA]
¡û
Identical group No.132479 (1 seq.)
>W1711412609
MGUK01000012
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
1534
1451
-
Tyr
GTA
[ENA]
¡û
Identical group No.132481 (1 seq.)
>W1711412889
MGVD01000100
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
5633
5718
+
Tyr
GTA
[ENA]
¡û
Identical group No.132482 (1 seq.)
>W1711413210
MGVN01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
374
289
-
Tyr
GTA
[ENA]
¡û
Identical group No.133313 (10 seq.)
>W1712038711
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
397820
397906
+
Tyr
GTA
[ENA]
¡û
>WENV180231618
OBCN01086424
[OBCN] human gut metagenome; human gut
42
125
+
Tyr
GTA
[ENA]
¢þ
>WENV180405021
OBSA01134141
[OBSA] human gut metagenome; ENVO:feces
127
44
-
Tyr
GTA
[ENA]
¢þ
>WENV181647552
OGNQ01000085
[OGNQ] metagenome; Human gut stool
58354
58271
-
Tyr
GTA
[ENA]
¢þ
>WENV181690993
OGOZ01001562
[OGOZ] human gut metagenome; faeces
9801
9715
-
Tyr
GTA
[ENA]
¢þ
>WENV182658444
OJML01000011
[OJML] human gut metagenome; feces
682
596
-
Tyr
GTA
[ENA]
¢þ
>WENV183070570
OLIS01000058
[OLIS] human gut metagenome; feces
70736
70822
+
Tyr
GTA
[ENA]
¢þ
>WENV183639914
OQVL01000237
[OQVL] human gut metagenome; human gut
2194
2111
-
Tyr
GTA
[ENA]
¢þ
>WENV183642971
OQVO01000348
[OQVO] human gut metagenome; human gut
2999
3082
+
Tyr
GTA
[ENA]
¢þ
>WENV183657459
OQWI01012883
[OQWI] human gut metagenome; human gut
2159
2073
-
Tyr
GTA
[ENA]
¢þ
Identical group No.144834 (1 seq.)
>W1910727732
MGUR01000031
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
8858
8773
-
Tyr
GTA
[ENA]
¡û
Identical group No.145196 (1 seq.)
>W1711413188
MGVM01000212
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
6740
6825
+
Tyr
GTA
[ENA]
¡û
Identical group No.146842 (1 seq.)
>W1711413377
MGVS01000067
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
24508
24423
-
Tyr
GTA
[ENA]
¡û
Identical group No.148345 (1 seq.)
>W1711412064
MGTV01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
1119
1204
+
Tyr
GTA
[ENA]
¡û
Identical group No.153591 (1 seq.)
>W1910727601
MGUO01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
22985
23071
+
Tyr
GTA
[ENA]
¡û
Identical group No.154381 (5 seq.)
>W1711412156
MGTX01000005
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
35757
35672
-
Tyr
GTA
[ENA]
¡û
>W1711412642
MGUL01000016
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
2120
2205
+
Tyr
GTA
[ENA]
¡û
>WENV180024189
FTIF01169993
[FTIF] metagenome; soil
90
5
-
Tyr
GTA
[ENA]
¢þ
>WENV183689758
ORMF011488387
[ORMF] groundwater metagenome; groundwater
783
868
+
Tyr
GTA
[ENA]
¢þ
>WENV170556210
CXWL01005666
[CXWL] groundwater metagenome; biofilm material
2679
2764
+
Tyr
GTA
[ENA]
¢þ
Identical group No.155189 (8 seq.)
>W1710917276
LNVX01000290
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
7469
7551
+
Tyr
GTA
[ENA]
¡û
>W1710917286
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
73057
72975
-
Tyr
GTA
[ENA]
¡û
>C08011115
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
347455
347537
+
Tyr
GTA
-
¡û
>WENV170715689
LQAB01011241
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
642
560
-
Tyr
GTA
[ENA]
¢þ
>WENV170715715
LQAB01012216
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
22120
22038
-
Tyr
GTA
[ENA]
¢þ
>WENV170715903
LQAB01019798
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
258
176
-
Tyr
GTA
[ENA]
¢þ
>C181002072
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
338519
338601
+
Tyr
GTA
-
¡û
>ENV000852
AP009510
Environmental sample from ENV division of INSDC
347455
347540
+
Tyr
GTA
[ENA]
Identical group No.174242 (1 seq.)
>C151053030
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
964934
964852
-
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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