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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GTG
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276678 (3 seq.)
>W1711412155
MGTX01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
30437
30362
-
His
GTG
[ENA]
¡û
>W1711412496
MGUH01000018
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
29530
29455
-
His
GTG
[ENA]
¡û
>W1711413356
MGVR01000467
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
2385
2309
-
His
GTG
[ENA]
¡û
Identical group No.276813 (2 seq.)
>W1711412848
MGVC01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
54029
53953
-
His
GTG
[ENA]
¡û
>W1711413170
MGVM01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
13655
13580
-
His
GTG
[ENA]
¡û
Identical group No.282938 (9 seq.)
>W1710917294
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
17734
17658
-
His
GTG
[ENA]
¡û
>W1710917342
LNVX01000545
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1633
1557
-
His
GTG
[ENA]
¡û
>W1710917352
LNVX01000607
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
336
260
-
His
GTG
[ENA]
¡û
>W1710917355
LNVX01000629
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
253
177
-
His
GTG
[ENA]
¡û
>C08011123
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
408261
408335
+
His
GTG
-
¡û
>WENV170715472
LQAB01001616
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
486
562
+
His
GTG
[ENA]
¢þ
>WENV170715737
LQAB01012903
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
29373
29449
+
His
GTG
[ENA]
¢þ
>C181002080
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
398895
398969
+
His
GTG
-
¡û
>ENV000860
AP009510
Environmental sample from ENV division of INSDC
408260
408338
+
His
GTG
[ENA]
Identical group No.282972 (2 seq.)
>C08004679
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
312301
312228
-
His
GTG
[Ensembl]
¡û
>W09107473
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
322597
322521
-
His
GTG
[ENA]
¡û
Identical group No.315493 (9 seq.)
>W1712038710
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
310331
310407
+
His
GTG
[ENA]
¡û
>WENV180405028
OBSA01136897
[OBSA] human gut metagenome; ENVO:feces
100
24
-
His
GTG
[ENA]
¢þ
>WENV181647586
OGNQ01000138
[OGNQ] metagenome; Human gut stool
39962
39886
-
His
GTG
[ENA]
¢þ
>WENV181690818
OGOZ01000635
[OGOZ] human gut metagenome; faeces
3244
3320
+
His
GTG
[ENA]
¢þ
>WENV182658525
OJML01000074
[OJML] human gut metagenome; feces
2873
2797
-
His
GTG
[ENA]
¢þ
>WENV183070697
OLIS01000285
[OLIS] human gut metagenome; feces
263
187
-
His
GTG
[ENA]
¢þ
>WENV183641674
OQVL01063032
[OQVL] human gut metagenome; human gut
1194
1118
-
His
GTG
[ENA]
¢þ
>WENV183645447
OQVQ01007255
[OQVQ] human gut metagenome; human gut
2911
2987
+
His
GTG
[ENA]
¢þ
>WENV183657480
OQWI01013390
[OQWI] human gut metagenome; human gut
2089
2165
+
His
GTG
[ENA]
¢þ
Identical group No.322880 (4 seq.)
>W1711412101
MGTW01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
38787
38863
+
His
GTG
[ENA]
¡û
>W1711412239
MGTZ01000042
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
14321
14245
-
His
GTG
[ENA]
¡û
>W1711412291
MGUA01000037
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
43813
43737
-
His
GTG
[ENA]
¡û
>W1711581871
MNUR01000007
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
9224
9300
+
His
GTG
[ENA]
¡û
Identical group No.362286 (3 seq.)
>W1710917347
LNVX01000562
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
381
307
-
His
GTG
[ENA]
¡û
>WENV170715463
LQAB01001388
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1300
1376
+
His
GTG
[ENA]
¢þ
>WENV170715802
LQAB01015645
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
3949
4023
+
His
GTG
[ENA]
¢þ
Identical group No.373140 (3 seq.)
>W1711412669
MGUL01000112
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
3716
3640
-
His
GTG
[ENA]
¡û
>WENV180252439
OBEQ010449580
[OBEQ] groundwater metagenome; groundwater
363
287
-
His
GTG
[ENA]
¢þ
>W1910727627
MGUO01000274
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
3493
3418
-
His
GTG
[ENA]
¡û
Identical group No.414661 (1 seq.)
>W1910727745
MGUR01000066
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
1531
1455
-
His
GTG
[ENA]
¡û
Identical group No.415182 (1 seq.)
>C151053035
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
876760
876686
-
His
GTG
[Ensembl]
¡û
Identical group No.416311 (1 seq.)
>W1711413261
MGVO01000082
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
5968
5892
-
His
GTG
[ENA]
¡û
Identical group No.429860 (1 seq.)
>W1711583325
MNXB01000005
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
39647
39571
-
His
GTG
[ENA]
¡û
Identical group No.458170 (10 seq.)
>W1711412036
MGTU01000011
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
42592
42517
-
His
GTG
[ENA]
¡û
>W1711412377
MGUD01000011
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
25256
25331
+
His
GTG
[ENA]
¡û
>W1711412415
MGUE01000042
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
25336
25411
+
His
GTG
[ENA]
¡û
>W1711412466
MGUG01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
55768
55843
+
His
GTG
[ENA]
¡û
>W1711412554
MGUI01000041
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
1263
1188
-
His
GTG
[ENA]
¡û
>W1711412811
MGVB01000058
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
9325
9400
+
His
GTG
[ENA]
¡û
>W1711413015
MGVH01000022
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
24888
24813
-
His
GTG
[ENA]
¡û
>WENV183680145
ORMF010144018
[ORMF] groundwater metagenome; groundwater
1535
1610
+
His
GTG
[ENA]
¢þ
>WENV170609585
FUWD011438753
[FUWD] metagenome; unknown
24
99
+
His
GTG
[ENA]
¢þ
>W1910727635
MGUP01000113
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
664
589
-
His
GTG
[ENA]
¡û
Identical group No.458181 (5 seq.)
>W1711411991
MGTT01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
19625
19699
+
His
GTG
[ENA]
¡û
>W1711412367
MGUC01000033
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
10753
10679
-
His
GTG
[ENA]
¡û
>W1711412789
MGVA01000059
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
66738
66664
-
His
GTG
[ENA]
¡û
>W1711413003
MGVG01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
66777
66703
-
His
GTG
[ENA]
¡û
>W1511618203
LCQR01000030
Unclassified
Parcubacteria group bacterium GW2011_GWF2_50_9 GW2011_GWF2_50_9 [LCQR]
212
287
+
His
GTG
[ENA]
¡û
Identical group No.552135 (1 seq.)
>W1711413204
MGVN01000070
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
7746
7671
-
His
GTG
[ENA]
¡û
Identical group No.589478 (2 seq.)
>W1711412076
MGTV01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
1978
1903
-
His
GTG
[ENA]
¡û
>WENV181231169
OFEK01012191
[OFEK] activated sludge metagenome; Anaerobic digester
1287
1362
+
His
GTG
[ENA]
¢þ
Identical group No.628857 (1 seq.)
>W1711413324
MGVQ01000104
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
24372
24297
-
His
GTG
[ENA]
¡û
Identical group No.670924 (4 seq.)
>W1711411911
MGTR01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
11799
11873
+
His
GTG
[ENA]
¡û
>W1910727585
MGUN01000021
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
1159
1085
-
His
GTG
[ENA]
¡û
>W1910727829
MGUU01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
728
654
-
His
GTG
[ENA]
¡û
>W1910727902
MGUW01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
84
10
-
His
GTG
[ENA]
¡û
Identical group No.705560 (5 seq.)
>W1711412683
MGUY01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
3215
3289
+
His
GTG
[ENA]
¡û
>W1711412726
MGUZ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
145605
145679
+
His
GTG
[ENA]
¡û
>W1711412913
MGVE01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
26810
26736
-
His
GTG
[ENA]
¡û
>W1711413106
MGVK01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
72220
72294
+
His
GTG
[ENA]
¡û
>W1711413135
MGVL01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
26772
26698
-
His
GTG
[ENA]
¡û
Identical group No.712130 (1 seq.)
>W1910727924
MGUX01000078
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
898
824
-
His
GTG
[ENA]
¡û
Identical group No.738760 (1 seq.)
>W1910727675
MGUQ01000003
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
1676
1602
-
His
GTG
[ENA]
¡û
Identical group No.752193 (1 seq.)
>W1711581951
MNUS01000193
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
29496
29422
-
His
GTG
[ENA]
¡û
Identical group No.770639 (1 seq.)
>W1910727755
MGUS01000031
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
10436
10510
+
His
GTG
[ENA]
¡û
Identical group No.824205 (1 seq.)
>W1730031818
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
4424
4498
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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