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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = GTT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.552140 (1 seq.)
>W1711413222
MGVN01000144
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
2761
2686
-
Asn
GTT
[ENA]
¡û
Identical group No.656678 (5 seq.)
>W1711412144
MGTX01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
123957
123885
-
Asn
GTT
[ENA]
¡û
>W1711412523
MGUH01000111
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
14840
14912
+
Asn
GTT
[ENA]
¡û
>W1711412639
MGUL01000007
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
4777
4851
+
Asn
GTT
[ENA]
¡û
>W1711413337
MGVR01000075
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
470
396
-
Asn
GTT
[ENA]
¡û
>WENV183694737
ORMF012282631
[ORMF] groundwater metagenome; groundwater
1073
999
-
Asn
GTT
[ENA]
¢þ
Identical group No.656771 (15 seq.)
>W1711412040
MGTU01000015
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
17410
17336
-
Asn
GTT
[ENA]
¡û
>W1711412063
MGTV01000005
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
5431
5357
-
Asn
GTT
[ENA]
¡û
>W1711412103
MGTW01000011
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
15175
15249
+
Asn
GTT
[ENA]
¡û
>W1711412246
MGTZ01000049
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
3980
3906
-
Asn
GTT
[ENA]
¡û
>W1711412296
MGUA01000045
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
4513
4587
+
Asn
GTT
[ENA]
¡û
>W1711412400
MGUE01000016
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
4304
4378
+
Asn
GTT
[ENA]
¡û
>W1711412439
MGUF01000059
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
86
12
-
Asn
GTT
[ENA]
¡û
>W1711412474
MGUG01000030
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
4680
4606
-
Asn
GTT
[ENA]
¡û
>W1711412573
MGUI01000067
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
22081
22009
-
Asn
GTT
[ENA]
¡û
>W1711412637
MGUK01000099
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
7068
6996
-
Asn
GTT
[ENA]
¡û
>W1711413036
MGVH01000096
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
4821
4747
-
Asn
GTT
[ENA]
¡û
>W1711581901
MNUR01000091
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
5925
5853
-
Asn
GTT
[ENA]
¡û
>WENV170609491
FUWD011421060
[FUWD] metagenome; unknown
3
77
+
Asn
GTT
[ENA]
¢þ
>W1910727667
MGUP01000965
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
1295
1367
+
Asn
GTT
[ENA]
¡û
>W1910727863
MGUV01000105
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
1614
1686
+
Asn
GTT
[ENA]
¡û
Identical group No.656792 (2 seq.)
>W1711412791
MGVA01000065
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
12118
12045
-
Asn
GTT
[ENA]
¡û
>W1711412994
MGVG01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
134942
135015
+
Asn
GTT
[ENA]
¡û
Identical group No.656795 (2 seq.)
>W1711412839
MGVC01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
293
220
-
Asn
GTT
[ENA]
¡û
>W1711412892
MGVD01000103
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
336
263
-
Asn
GTT
[ENA]
¡û
Identical group No.660422 (2 seq.)
>C08004659
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1039003
1039077
+
Asn
GTT
[Ensembl]
¡û
>W09107456
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
594337
594263
-
Asn
GTT
[ENA]
¡û
Identical group No.660452 (8 seq.)
>W1710917370
LNVX01000794
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1350
1278
-
Asn
GTT
[ENA]
¡û
>C08011128
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
1020124
1020197
+
Asn
GTT
-
¡û
>WENV170715438
LQAB01000668
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
792
720
-
Asn
GTT
[ENA]
¢þ
>WENV170715728
LQAB01012432
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
780
708
-
Asn
GTT
[ENA]
¢þ
>WENV170715817
LQAB01016297
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2139
2067
-
Asn
GTT
[ENA]
¢þ
>WENV170715940
LQAB01021292
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
266
338
+
Asn
GTT
[ENA]
¢þ
>C181002085
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
1007715
1007788
+
Asn
GTT
-
¡û
>ENV000880
AP009510
Environmental sample from ENV division of INSDC
1020124
1020200
+
Asn
GTT
[ENA]
Identical group No.686900 (1 seq.)
>W1711412205
MGTY01000095
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
21560
21632
+
Asn
GTT
[ENA]
¡û
Identical group No.705564 (5 seq.)
>W1711412706
MGUY01000103
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
6202
6129
-
Asn
GTT
[ENA]
¡û
>W1711412748
MGUZ01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
85185
85112
-
Asn
GTT
[ENA]
¡û
>W1711412929
MGVE01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
59322
59249
-
Asn
GTT
[ENA]
¡û
>W1711413085
MGVJ01000115
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
1419
1492
+
Asn
GTT
[ENA]
¡û
>W1711413149
MGVL01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
59333
59260
-
Asn
GTT
[ENA]
¡û
Identical group No.713795 (4 seq.)
>W1710917260
LNVX01000218
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
36002
36074
+
Asn
GTT
[ENA]
¡û
>WENV170715498
LQAB01002764
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1463
1535
+
Asn
GTT
[ENA]
¢þ
>WENV170715621
LQAB01008180
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
300
373
+
Asn
GTT
[ENA]
¢þ
>WENV170715724
LQAB01012349
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
17399
17327
-
Asn
GTT
[ENA]
¢þ
Identical group No.713796 (3 seq.)
>W1710917249
LNVX01000133
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
9284
9212
-
Asn
GTT
[ENA]
¡û
>WENV170715500
LQAB01002807
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
554
626
+
Asn
GTT
[ENA]
¢þ
>WENV170715759
LQAB01014121
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
557
629
+
Asn
GTT
[ENA]
¢þ
Identical group No.724497 (5 seq.)
>W1712038727
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
118490
118562
+
Asn
GTT
[ENA]
¡û
>WENV181691203
OGOZ01003449
[OGOZ] human gut metagenome; faeces
6431
6505
+
Asn
GTT
[ENA]
¢þ
>WENV182658571
OJML01000128
[OJML] human gut metagenome; feces
14807
14733
-
Asn
GTT
[ENA]
¢þ
>WENV183070860
OLIS01000979
[OLIS] human gut metagenome; feces
14819
14745
-
Asn
GTT
[ENA]
¢þ
>WENV183657525
OQWI01015638
[OQWI] human gut metagenome; human gut
1019
945
-
Asn
GTT
[ENA]
¢þ
Identical group No.727681 (2 seq.)
>W1711412942
MGVF01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
882
955
+
Asn
GTT
[ENA]
¡û
>W1711413273
MGVO01000107
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
53485
53412
-
Asn
GTT
[ENA]
¡û
Identical group No.751133 (2 seq.)
>WENV180249250
OBEQ010181791
[OBEQ] groundwater metagenome; groundwater
776
704
-
Asn
GTT
[ENA]
¢þ
>W1910727747
MGUR01000069
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
20405
20479
+
Asn
GTT
[ENA]
¡û
Identical group No.751514 (1 seq.)
>C151053023
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1456470
1456543
+
Asn
GTT
[Ensembl]
¡û
Identical group No.752086 (1 seq.)
>W1711413191
MGVM01000222
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
601
675
+
Asn
GTT
[ENA]
¡û
Identical group No.752181 (1 seq.)
>W1711581917
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
5786
5860
+
Asn
GTT
[ENA]
¡û
Identical group No.760918 (1 seq.)
>W1910727795
MGUT01000052
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
146
72
-
Asn
GTT
[ENA]
¡û
Identical group No.770640 (1 seq.)
>W1910727756
MGUS01000035
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
6058
5985
-
Asn
GTT
[ENA]
¡û
Identical group No.779131 (1 seq.)
>W1910727599
MGUO01000015
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
13241
13315
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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