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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TAA
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73006 (1 seq.)
>W1711412870
MGVC01000081
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
69201
69114
-
Leu
TAA
[ENA]
¡û
Identical group No.73008 (3 seq.)
>W1711413308
MGVQ01000039
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
14274
14187
-
Leu
TAA
[ENA]
¡û
>W1711413359
MGVS01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
3406
3493
+
Leu
TAA
[ENA]
¡û
>W1711413416
MGVT01000106
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
14004
13917
-
Leu
TAA
[ENA]
¡û
Identical group No.73061 (2 seq.)
>WENV170716313
LSPZ01000814
[LSPZ] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 2
1679
1766
+
Leu
TAA
[ENA]
¢þ
>C151053006
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
435243
435330
+
Leu
TAA
[Ensembl]
¡û
Identical group No.73403 (10 seq.)
>W1710917372
LNVX01000820
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2783
2868
+
Leu
TAA
[ENA]
¡û
>W1710917373
LNVX01000829
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2487
2572
+
Leu
TAA
[ENA]
¡û
>W1710917375
LNVX01000839
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
556
641
+
Leu
TAA
[ENA]
¡û
>C08011137
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
786486
786400
-
Leu
TAA
-
¡û
>WENV170715592
LQAB01006846
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
391
476
+
Leu
TAA
[ENA]
¢þ
>WENV170715664
LQAB01009490
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1166
1251
+
Leu
TAA
[ENA]
¢þ
>WENV170715685
LQAB01010995
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
125
40
-
Leu
TAA
[ENA]
¢þ
>WENV170715919
LQAB01020448
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
340
255
-
Leu
TAA
[ENA]
¢þ
>C181002094
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
776045
775959
-
Leu
TAA
-
¡û
>ENV000872
AP009510
Environmental sample from ENV division of INSDC
786487
786397
-
Leu
TAA
[ENA]
Identical group No.74610 (4 seq.)
>W1711411927
MGTR01000095
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
3962
3877
-
Leu
TAA
[ENA]
¡û
>W1910727570
MGUN01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
18389
18476
+
Leu
TAA
[ENA]
¡û
>W1910727813
MGUU01000005
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
4595
4682
+
Leu
TAA
[ENA]
¡û
>W1910727881
MGUW01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
3319
3406
+
Leu
TAA
[ENA]
¡û
Identical group No.79516 (1 seq.)
>W1711412899
MGVD01000149
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
5296
5383
+
Leu
TAA
[ENA]
¡û
Identical group No.79548 (4 seq.)
>W1710917264
LNVX01000219
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
4324
4411
+
Leu
TAA
[ENA]
¡û
>W1710917374
LNVX01000837
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1121
1208
+
Leu
TAA
[ENA]
¡û
>WENV170715754
LQAB01013864
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2632
2545
-
Leu
TAA
[ENA]
¢þ
>WENV170715884
LQAB01018930
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
41667
41580
-
Leu
TAA
[ENA]
¢þ
Identical group No.81229 (5 seq.)
>W1711412755
MGUZ01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
31785
31698
-
Leu
TAA
[ENA]
¡û
>W1711412939
MGVE01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
156481
156568
+
Leu
TAA
[ENA]
¡û
>W1711413076
MGVJ01000070
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
33109
33196
+
Leu
TAA
[ENA]
¡û
>W1711413118
MGVK01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
123713
123626
-
Leu
TAA
[ENA]
¡û
>W1711413126
MGVL01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
156510
156597
+
Leu
TAA
[ENA]
¡û
Identical group No.81230 (2 seq.)
>W1711412955
MGVF01000107
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
24590
24677
+
Leu
TAA
[ENA]
¡û
>W1711413266
MGVO01000092
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
37489
37576
+
Leu
TAA
[ENA]
¡û
Identical group No.84066 (1 seq.)
>W1711413181
MGVM01000135
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
5155
5242
+
Leu
TAA
[ENA]
¡û
Identical group No.84582 (1 seq.)
>W1710917311
LNVX01000364
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
28375
28288
-
Leu
TAA
[ENA]
¡û
Identical group No.85139 (1 seq.)
>W1711583352
MNXB01000094
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
2162
2075
-
Leu
TAA
[ENA]
¡û
Identical group No.85832 (1 seq.)
>W1910727767
MGUS01000064
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
19701
19615
-
Leu
TAA
[ENA]
¡û
Identical group No.90919 (4 seq.)
>W1711411944
MGTS01000014
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
21923
22008
+
Leu
TAA
[ENA]
¡û
>W1711412298
MGUB01000007
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
4185
4270
+
Leu
TAA
[ENA]
¡û
>W1711412600
MGUJ01000135
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
10424
10509
+
Leu
TAA
[ENA]
¡û
>WENV183675274
ORJL011489670
[ORJL] groundwater metagenome; groundwater
213
129
-
Leu
TAA
[ENA]
¢þ
Identical group No.93622 (4 seq.)
>W1711412010
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
128912
128996
+
Leu
TAA
[ENA]
¡û
>W1711412095
MGTV01000047
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
15361
15277
-
Leu
TAA
[ENA]
¡û
>W1711412345
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
106932
106848
-
Leu
TAA
[ENA]
¡û
>W1711412433
MGUF01000018
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
6277
6193
-
Leu
TAA
[ENA]
¡û
Identical group No.99066 (1 seq.)
>W1711413240
MGVN01000240
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
18955
19040
+
Leu
TAA
[ENA]
¡û
Identical group No.100740 (3 seq.)
>W1711412135
MGTW01000076
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
14683
14596
-
Leu
TAA
[ENA]
¡û
>W1711412245
MGTZ01000048
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
66665
66752
+
Leu
TAA
[ENA]
¡û
>W1711412261
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
62063
61979
-
Leu
TAA
[ENA]
¡û
Identical group No.113403 (2 seq.)
>W1711412146
MGTX01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
3102
3186
+
Leu
TAA
[ENA]
¡û
>W1711412518
MGUH01000103
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
3060
3144
+
Leu
TAA
[ENA]
¡û
Identical group No.113434 (2 seq.)
>W1711412481
MGUG01000048
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
114620
114703
+
Leu
TAA
[ENA]
¡û
>W1711412533
MGUI01000005
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
10781
10698
-
Leu
TAA
[ENA]
¡û
Identical group No.113438 (2 seq.)
>W1711412766
MGVA01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
174853
174938
+
Leu
TAA
[ENA]
¡û
>W1711412979
MGVG01000018
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
141094
141179
+
Leu
TAA
[ENA]
¡û
Identical group No.114598 (4 seq.)
>C08004643
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
123467
123551
+
Leu
TAA
[Ensembl]
¡û
>WENV183645299
OQVQ01003224
[OQVQ] human gut metagenome; human gut
4315
4399
+
Leu
TAA
[ENA]
¢þ
>WENV183654341
OQWA01026821
[OQWA] human gut metagenome; human gut
253
169
-
Leu
TAA
[ENA]
¢þ
>W09107462
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
133760
133844
+
Leu
TAA
[ENA]
¡û
Identical group No.123407 (3 seq.)
>W1711412038
MGTU01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
12920
12836
-
Leu
TAA
[ENA]
¡û
>W1711412384
MGUD01000023
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
13232
13148
-
Leu
TAA
[ENA]
¡û
>W1711412404
MGUE01000024
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
12920
12836
-
Leu
TAA
[ENA]
¡û
Identical group No.123409 (1 seq.)
>W1711412188
MGTY01000038
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
14673
14590
-
Leu
TAA
[ENA]
¡û
Identical group No.123429 (3 seq.)
>W1711412630
MGUK01000084
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
134055
134139
+
Leu
TAA
[ENA]
¡û
>W1711412796
MGVB01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
19585
19502
-
Leu
TAA
[ENA]
¡û
>W1711413032
MGVH01000086
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
3348
3265
-
Leu
TAA
[ENA]
¡û
Identical group No.123430 (1 seq.)
>W1711413052
MGVI01000207
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
576
493
-
Leu
TAA
[ENA]
¡û
Identical group No.123468 (1 seq.)
>W1711581884
MNUR01000056
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
45376
45459
+
Leu
TAA
[ENA]
¡û
Identical group No.135117 (2 seq.)
>W1711412663
MGUL01000092
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
58406
58322
-
Leu
TAA
[ENA]
¡û
>W1711413344
MGVR01000178
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
4582
4666
+
Leu
TAA
[ENA]
¡û
Identical group No.138659 (1 seq.)
>W1910727536
MGUM01000029
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
8946
8861
-
Leu
TAA
[ENA]
¡û
Identical group No.145222 (1 seq.)
>W1711581936
MNUS01000115
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
3760
3677
-
Leu
TAA
[ENA]
¡û
Identical group No.166784 (7 seq.)
>W1712038708
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
239793
239876
+
Leu
TAA
[ENA]
¡û
>WENV180404756
OBSA01043084
[OBSA] human gut metagenome; ENVO:feces
78
161
+
Leu
TAA
[ENA]
¢þ
>WENV181691130
OGOZ01002583
[OGOZ] human gut metagenome; faeces
7186
7103
-
Leu
TAA
[ENA]
¢þ
>WENV182658523
OJML01000074
[OJML] human gut metagenome; feces
55006
54923
-
Leu
TAA
[ENA]
¢þ
>WENV183070675
OLIS01000234
[OLIS] human gut metagenome; feces
12656
12573
-
Leu
TAA
[ENA]
¢þ
>WENV183650109
OQVT01011220
[OQVT] human gut metagenome; human gut
1435
1518
+
Leu
TAA
[ENA]
¢þ
>WENV183657497
OQWI01014122
[OQWI] human gut metagenome; human gut
1420
1337
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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