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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TAC
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254747 (1 seq.)
>W1711413192
MGVN01000010
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
18783
18709
-
Val
TAC
[ENA]
¡û
Identical group No.266540 (1 seq.)
>W1711583350
MNXB01000091
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
11942
11868
-
Val
TAC
[ENA]
¡û
Identical group No.276815 (1 seq.)
>W1711412858
MGVC01000061
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
24842
24769
-
Val
TAC
[ENA]
¡û
Identical group No.361941 (1 seq.)
>W1711412886
MGVD01000076
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
3378
3303
-
Val
TAC
[ENA]
¡û
Identical group No.464786 (3 seq.)
>C08011110
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
23299
23374
+
Val
TAC
-
¡û
>C181002067
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
22932
23005
+
Val
TAC
-
¡û
>ENV000839
AP009510
Environmental sample from ENV division of INSDC
23299
23374
+
Val
TAC
[ENA]
Identical group No.464832 (2 seq.)
>C08004642
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
98670
98745
+
Val
TAC
[Ensembl]
¡û
>W09107461
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
108964
109039
+
Val
TAC
[ENA]
¡û
Identical group No.552527 (7 seq.)
>W1710917265
LNVX01000224
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
27898
27973
+
Val
TAC
[ENA]
¡û
>W1710917353
LNVX01000620
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
950
875
-
Val
TAC
[ENA]
¡û
>WENV170715422
LQAB01000134
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
425
349
-
Val
TAC
[ENA]
¢þ
>WENV170715503
LQAB01002993
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
235
310
+
Val
TAC
[ENA]
¢þ
>WENV170715619
LQAB01007995
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
90
165
+
Val
TAC
[ENA]
¢þ
>WENV170715729
LQAB01012475
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
792
717
-
Val
TAC
[ENA]
¢þ
>WENV170715806
LQAB01015904
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
6235
6310
+
Val
TAC
[ENA]
¢þ
Identical group No.596060 (1 seq.)
>W1712038728
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
186079
186154
+
Val
TAC
[ENA]
¡û
Identical group No.612190 (1 seq.)
>C151053038
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
749040
748965
-
Val
TAC
[Ensembl]
¡û
Identical group No.656675 (2 seq.)
>W1711412138
MGTX01000001
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
3734
3806
+
Val
TAC
[ENA]
¡û
>W1711412522
MGUH01000104
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
61312
61240
-
Val
TAC
[ENA]
¡û
Identical group No.656777 (4 seq.)
>W1711412259
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
143281
143352
+
Val
TAC
[ENA]
¡û
>W1711412488
MGUG01000055
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
8143
8217
+
Val
TAC
[ENA]
¡û
>W1711412552
MGUI01000040
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
6476
6405
-
Val
TAC
[ENA]
¡û
>W1711412632
MGUK01000084
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
43023
42949
-
Val
TAC
[ENA]
¡û
Identical group No.670925 (3 seq.)
>W1910727595
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
58294
58368
+
Val
TAC
[ENA]
¡û
>W1910727834
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
58332
58406
+
Val
TAC
[ENA]
¡û
>W1910727908
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
58335
58409
+
Val
TAC
[ENA]
¡û
Identical group No.673790 (11 seq.)
>W1711411966
MGTS01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
40131
40057
-
Val
TAC
[ENA]
¡û
>W1711412037
MGTU01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
88854
88925
+
Val
TAC
[ENA]
¡û
>W1711412083
MGTV01000023
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
88308
88382
+
Val
TAC
[ENA]
¡û
>W1711412317
MGUB01000098
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
12925
12851
-
Val
TAC
[ENA]
¡û
>W1711412403
MGUE01000024
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
88854
88925
+
Val
TAC
[ENA]
¡û
>W1711412436
MGUF01000040
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
4455
4381
-
Val
TAC
[ENA]
¡û
>W1711412824
MGVB01000138
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
4631
4557
-
Val
TAC
[ENA]
¡û
>W1711413043
MGVH01000140
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
27710
27784
+
Val
TAC
[ENA]
¡û
>W1711581905
MNUR01000100
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
4254
4328
+
Val
TAC
[ENA]
¡û
>W1910727664
MGUP01000946
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
761
835
+
Val
TAC
[ENA]
¡û
>W1910727857
MGUV01000069
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
1385
1311
-
Val
TAC
[ENA]
¡û
Identical group No.686899 (1 seq.)
>W1711412198
MGTY01000063
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
96496
96568
+
Val
TAC
[ENA]
¡û
Identical group No.705562 (6 seq.)
>W1711412693
MGUY01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
17218
17145
-
Val
TAC
[ENA]
¡û
>W1711412737
MGUZ01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
17386
17313
-
Val
TAC
[ENA]
¡û
>W1711412924
MGVE01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
17367
17294
-
Val
TAC
[ENA]
¡û
>W1711413079
MGVJ01000095
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
4077
4004
-
Val
TAC
[ENA]
¡û
>W1711413097
MGVK01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
17393
17320
-
Val
TAC
[ENA]
¡û
>W1711413144
MGVL01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
17615
17542
-
Val
TAC
[ENA]
¡û
Identical group No.712127 (1 seq.)
>W1910727917
MGUX01000018
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
2140
2068
-
Val
TAC
[ENA]
¡û
Identical group No.713542 (1 seq.)
>W1711413232
MGVN01000206
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
252
326
+
Val
TAC
[ENA]
¡û
Identical group No.721031 (3 seq.)
>W1711412019
MGTT01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
2189
2115
-
Val
TAC
[ENA]
¡û
>W1711412352
MGUC01000025
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
86757
86831
+
Val
TAC
[ENA]
¡û
>W1711412966
MGVG01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
15838
15909
+
Val
TAC
[ENA]
¡û
Identical group No.727659 (2 seq.)
>W1711412128
MGTW01000065
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
2847
2773
-
Val
TAC
[ENA]
¡û
>W1711412222
MGTZ01000013
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
5406
5332
-
Val
TAC
[ENA]
¡û
Identical group No.727682 (2 seq.)
>W1711412950
MGVF01000051
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
3976
3902
-
Val
TAC
[ENA]
¡û
>W1711413246
MGVO01000005
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
3914
3840
-
Val
TAC
[ENA]
¡û
Identical group No.732248 (2 seq.)
>W1910727534
MGUM01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
30809
30738
-
Val
TAC
[ENA]
¡û
>W1910727803
MGUT01000071
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
7606
7535
-
Val
TAC
[ENA]
¡û
Identical group No.751128 (1 seq.)
>W1910727722
MGUR01000016
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
11293
11364
+
Val
TAC
[ENA]
¡û
Identical group No.757047 (1 seq.)
>W1711413372
MGVS01000031
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
48405
48478
+
Val
TAC
[ENA]
¡û
Identical group No.770637 (1 seq.)
>W1910727751
MGUS01000018
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
23824
23752
-
Val
TAC
[ENA]
¡û
Identical group No.771698 (1 seq.)
>W1711413277
MGVP01000070
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
1662
1733
+
Val
TAC
[ENA]
¡û
Identical group No.779137 (1 seq.)
>W1910727617
MGUO01000176
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
2464
2535
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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