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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TAG
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113433 (4 seq.)
>W1711412473
MGUG01000030
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
115449
115363
-
Leu
TAG
[ENA]
¡û
>W1711581870
MNUR01000001
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
24052
24137
+
Leu
TAG
[ENA]
¡û
>W1910727674
MGUP01001015
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2928
2845
-
Leu
TAG
[ENA]
¡û
>W1910727860
MGUV01000078
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
2032
1949
-
Leu
TAG
[ENA]
¡û
Identical group No.113437 (2 seq.)
>W1711412762
MGVA01000016
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
21721
21638
-
Leu
TAG
[ENA]
¡û
>W1711412998
MGVG01000042
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
214744
214827
+
Leu
TAG
[ENA]
¡û
Identical group No.123406 (4 seq.)
>W1711412032
MGTU01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
106955
106870
-
Leu
TAG
[ENA]
¡û
>W1711412429
MGUE01000053
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
125368
125453
+
Leu
TAG
[ENA]
¡û
>W1711412828
MGVB01000168
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
3854
3939
+
Leu
TAG
[ENA]
¡û
>W1711413029
MGVH01000059
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
7869
7784
-
Leu
TAG
[ENA]
¡û
Identical group No.132480 (1 seq.)
>W1711412615
MGUK01000039
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
55321
55238
-
Leu
TAG
[ENA]
¡û
Identical group No.132484 (1 seq.)
>W1711413216
MGVN01000108
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
5422
5337
-
Leu
TAG
[ENA]
¡û
Identical group No.135106 (1 seq.)
>W1711412282
MGUA01000031
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
33969
33884
-
Leu
TAG
[ENA]
¡û
Identical group No.137188 (2 seq.)
>W1711412106
MGTW01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
23668
23584
-
Leu
TAG
[ENA]
¡û
>W1711412230
MGTZ01000028
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
23081
22997
-
Leu
TAG
[ENA]
¡û
Identical group No.141114 (1 seq.)
>W1711412559
MGUI01000046
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
84734
84818
+
Leu
TAG
[ENA]
¡û
Identical group No.148346 (1 seq.)
>W1711412092
MGTV01000038
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
3322
3239
-
Leu
TAG
[ENA]
¡û
Identical group No.151174 (1 seq.)
>W1711412381
MGUD01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
26638
26553
-
Leu
TAG
[ENA]
¡û
Identical group No.166315 (2 seq.)
>W1710917306
LNVX01000332
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
195
279
+
Leu
TAG
[ENA]
¡û
>WENV170715561
LQAB01005604
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2308
2224
-
Leu
TAG
[ENA]
¢þ
Identical group No.166319 (3 seq.)
>W1710917271
LNVX01000242
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1870
1786
-
Leu
TAG
[ENA]
¡û
>W1710917292
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
43009
42925
-
Leu
TAG
[ENA]
¡û
>WENV170715735
LQAB01012903
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4097
4181
+
Leu
TAG
[ENA]
¢þ
Identical group No.174170 (1 seq.)
>W1910727713
MGUR01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
5413
5498
+
Leu
TAG
[ENA]
¡û
Identical group No.182293 (2 seq.)
>C08004654
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
797979
798060
+
Leu
TAG
[Ensembl]
¡û
>W09107489
ABIQ01000005
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
42978
42897
-
Leu
TAG
[ENA]
¡û
Identical group No.182305 (3 seq.)
>C08011121
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
377645
377728
+
Leu
TAG
-
¡û
>C181002078
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
368760
368843
+
Leu
TAG
-
¡û
>ENV000858
AP009510
Environmental sample from ENV division of INSDC
377645
377731
+
Leu
TAG
[ENA]
Identical group No.194002 (2 seq.)
>W1711411978
MGTS01000042
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
129200
129119
-
Leu
TAG
[ENA]
¡û
>W1711412580
MGUJ01000053
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
15618
15537
-
Leu
TAG
[ENA]
¡û
Identical group No.196283 (5 seq.)
>W1711412703
MGUY01000081
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
2397
2314
-
Leu
TAG
[ENA]
¡û
>W1711412752
MGUZ01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
112035
111952
-
Leu
TAG
[ENA]
¡û
>W1711412937
MGVE01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
4831
4914
+
Leu
TAG
[ENA]
¡û
>W1711413069
MGVJ01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
1331
1248
-
Leu
TAG
[ENA]
¡û
>W1711413162
MGVL01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
4817
4900
+
Leu
TAG
[ENA]
¡û
Identical group No.198452 (1 seq.)
>W1910727934
MGUX01000158
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
3084
3165
+
Leu
TAG
[ENA]
¡û
Identical group No.198928 (1 seq.)
>W1711412873
MGVD01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
3989
4070
+
Leu
TAG
[ENA]
¡û
Identical group No.199017 (3 seq.)
>W1710917259
LNVX01000215
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
6004
5921
-
Leu
TAG
[ENA]
¡û
>WENV170715437
LQAB01000452
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
7350
7267
-
Leu
TAG
[ENA]
¢þ
>WENV170715670
LQAB01009747
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
919
1002
+
Leu
TAG
[ENA]
¢þ
Identical group No.203189 (2 seq.)
>W1711411980
MGTT01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
250
332
+
Leu
TAG
[ENA]
¡û
>W1711412356
MGUC01000028
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
254
336
+
Leu
TAG
[ENA]
¡û
Identical group No.203191 (2 seq.)
>W1711412958
MGVF01000115
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
6728
6809
+
Leu
TAG
[ENA]
¡û
>W1711413271
MGVO01000101
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
25299
25380
+
Leu
TAG
[ENA]
¡û
Identical group No.207134 (1 seq.)
>W1712038722
NFJD01000002
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
249707
249626
-
Leu
TAG
[ENA]
¡û
Identical group No.210121 (1 seq.)
>C151053008
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
437802
437885
+
Leu
TAG
[Ensembl]
¡û
Identical group No.211813 (1 seq.)
>W1711413361
MGVS01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
36213
36296
+
Leu
TAG
[ENA]
¡û
Identical group No.218272 (3 seq.)
>W1711412141
MGTX01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
93932
94012
+
Leu
TAG
[ENA]
¡û
>W1711412516
MGUH01000097
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
3136
3056
-
Leu
TAG
[ENA]
¡û
>W1711412659
MGUL01000079
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1071
1153
+
Leu
TAG
[ENA]
¡û
Identical group No.218280 (1 seq.)
>W1711412846
MGVC01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
18241
18321
+
Leu
TAG
[ENA]
¡û
Identical group No.218282 (2 seq.)
>W1711413298
MGVQ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
39131
39213
+
Leu
TAG
[ENA]
¡û
>W1711413422
MGVT01000120
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
5221
5303
+
Leu
TAG
[ENA]
¡û
Identical group No.219519 (4 seq.)
>W1711411934
MGTR01000125
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
14760
14840
+
Leu
TAG
[ENA]
¡û
>W1910727565
MGUN01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
76313
76393
+
Leu
TAG
[ENA]
¡û
>W1910727852
MGUU01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
76321
76401
+
Leu
TAG
[ENA]
¡û
>W1910727878
MGUW01000006
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
76321
76401
+
Leu
TAG
[ENA]
¡û
Identical group No.220778 (1 seq.)
>W1711412204
MGTY01000095
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
7105
7185
+
Leu
TAG
[ENA]
¡û
Identical group No.225287 (1 seq.)
>W1910727698
MGUQ01000074
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
8613
8695
+
Leu
TAG
[ENA]
¡û
Identical group No.226366 (1 seq.)
>W1711413168
MGVM01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
14125
14205
+
Leu
TAG
[ENA]
¡û
Identical group No.226371 (1 seq.)
>W1711581950
MNUS01000180
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
2189
2109
-
Leu
TAG
[ENA]
¡û
Identical group No.227181 (1 seq.)
>W1910727810
MGUT01000077
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
33087
33005
-
Leu
TAG
[ENA]
¡û
Identical group No.227781 (1 seq.)
>W1910727774
MGUS01000072
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
4910
4991
+
Leu
TAG
[ENA]
¡û
Identical group No.230528 (1 seq.)
>W1711413202
MGVN01000067
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
31770
31849
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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