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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TCG
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276804 (1 seq.)
>W1711412487
MGUG01000054
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
184697
184773
+
Arg
TCG
[ENA]
¡û
Identical group No.276807 (2 seq.)
>W1711412794
MGVA01000069
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
57439
57512
+
Arg
TCG
[ENA]
¡û
>W1711412993
MGVG01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
69998
70071
+
Arg
TCG
[ENA]
¡û
Identical group No.282868 (2 seq.)
>C08004646
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
344928
345002
+
Arg
TCG
[Ensembl]
¡û
>W09107465
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
355227
355301
+
Arg
TCG
[ENA]
¡û
Identical group No.298292 (4 seq.)
>W1711411917
MGTR01000048
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
15037
15113
+
Arg
TCG
[ENA]
¡û
>W1910727560
MGUN01000007
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
34045
34121
+
Arg
TCG
[ENA]
¡û
>W1910727812
MGUU01000001
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
34017
34093
+
Arg
TCG
[ENA]
¡û
>W1910727873
MGUW01000001
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
34044
34120
+
Arg
TCG
[ENA]
¡û
Identical group No.322653 (2 seq.)
>W1711412053
MGTU01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
131539
131612
+
Arg
TCG
[ENA]
¡û
>W1711412390
MGUE01000002
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
11521
11594
+
Arg
TCG
[ENA]
¡û
Identical group No.322712 (2 seq.)
>W1711412094
MGTV01000039
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
37009
36933
-
Arg
TCG
[ENA]
¡û
>W1711412440
MGUF01000062
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
6879
6955
+
Arg
TCG
[ENA]
¡û
Identical group No.322714 (2 seq.)
>W1711412813
MGVB01000086
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
2041
2115
+
Arg
TCG
[ENA]
¡û
>W1711413017
MGVH01000030
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
6384
6458
+
Arg
TCG
[ENA]
¡û
Identical group No.322881 (1 seq.)
>W1711581875
MNUR01000020
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
931
1005
+
Arg
TCG
[ENA]
¡û
Identical group No.338793 (2 seq.)
>W1711411949
MGTS01000015
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
16552
16478
-
Arg
TCG
[ENA]
¡û
>W1711412576
MGUJ01000021
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
113
39
-
Arg
TCG
[ENA]
¡û
Identical group No.361938 (1 seq.)
>W1711412634
MGUK01000085
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
16537
16611
+
Arg
TCG
[ENA]
¡û
Identical group No.373105 (3 seq.)
>W1711412284
MGUA01000033
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
24546
24470
-
Arg
TCG
[ENA]
¡û
>W1711412534
MGUI01000008
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
11515
11589
+
Arg
TCG
[ENA]
¡û
>SRA1020647
SRR035083.146112
454 Sequencing (SRP001804)
282
357
+
Arg
TCG
[SRA]
Identical group No.382166 (2 seq.)
>W1711412112
MGTW01000034
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
19877
19951
+
Arg
TCG
[ENA]
¡û
>W1711412220
MGTZ01000007
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
24818
24744
-
Arg
TCG
[ENA]
¡û
Identical group No.382204 (2 seq.)
>W1711412008
MGTT01000027
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
28195
28122
-
Arg
TCG
[ENA]
¡û
>W1711412349
MGUC01000022
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
28193
28120
-
Arg
TCG
[ENA]
¡û
Identical group No.397838 (1 seq.)
>W1910727706
MGUQ01000100
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
2118
2192
+
Arg
TCG
[ENA]
¡û
Identical group No.414656 (1 seq.)
>W1910727666
MGUP01000959
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
3666
3740
+
Arg
TCG
[ENA]
¡û
Identical group No.414657 (1 seq.)
>W1910727712
MGUR01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
5257
5332
+
Arg
TCG
[ENA]
¡û
Identical group No.423325 (1 seq.)
>W1711413367
MGVS01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
26601
26528
-
Arg
TCG
[ENA]
¡û
Identical group No.429792 (1 seq.)
>W1711413322
MGVQ01000102
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
13469
13542
+
Arg
TCG
[ENA]
¡û
Identical group No.429861 (1 seq.)
>W1711583328
MNXB01000010
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
11681
11608
-
Arg
TCG
[ENA]
¡û
Identical group No.440496 (1 seq.)
>W1711413281
MGVP01000209
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
2604
2531
-
Arg
TCG
[ENA]
¡û
Identical group No.596061 (1 seq.)
>W1712038730
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
221949
222021
+
Arg
TCG
[ENA]
¡û
Identical group No.656677 (5 seq.)
>W1711412143
MGTX01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
149225
149151
-
Arg
TCG
[ENA]
¡û
>W1711412497
MGUH01000037
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
4546
4472
-
Arg
TCG
[ENA]
¡û
>W1711412661
MGUL01000088
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
7834
7762
-
Arg
TCG
[ENA]
¡û
>W1711413345
MGVR01000190
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
8666
8594
-
Arg
TCG
[ENA]
¡û
>WENV183679467
ORMF010065994
[ORMF] groundwater metagenome; groundwater
1928
2002
+
Arg
TCG
[ENA]
¢þ
Identical group No.686901 (1 seq.)
>W1711412206
MGTY01000095
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
78082
78011
-
Arg
TCG
[ENA]
¡û
Identical group No.712132 (1 seq.)
>W1910727932
MGUX01000158
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
2106
2177
+
Arg
TCG
[ENA]
¡û
Identical group No.752186 (1 seq.)
>W1711581930
MNUS01000083
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
13725
13651
-
Arg
TCG
[ENA]
¡û
Identical group No.779140 (1 seq.)
>W1910727626
MGUO01000272
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
4953
4882
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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