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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TCT
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276808 (10 seq.)
>W1711412834
MGVC01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
15812
15736
-
Arg
TCT
[ENA]
¡û
>W1910730975
MHDH01000031
Nitrospinota
Nitrospinae bacterium RIFCSPHIGHO2_02_39_11 [MHDH]
92
16
-
Arg
TCT
[ENA]
¡û
>W1910731039
MHDI01000101
Nitrospinota
Nitrospinae bacterium RIFCSPHIGHO2_02_FULL_39_82 [MHDI]
13383
13459
+
Arg
TCT
[ENA]
¡û
>W1910731068
MHDJ01000080
Nitrospinota
Nitrospinae bacterium RIFCSPHIGHO2_12_FULL_39_42 [MHDJ]
22577
22653
+
Arg
TCT
[ENA]
¡û
>W1910731083
MHDK01000041
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_01_FULL_39_10 [MHDK]
2532
2608
+
Arg
TCT
[ENA]
¡û
>W1910731164
MHDL01000184
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_02_39_17 [MHDL]
1605
1529
-
Arg
TCT
[ENA]
¡û
>W1910731194
MHDM01000108
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_02_FULL_39_110 [MHDM]
13016
13092
+
Arg
TCT
[ENA]
¡û
>W1910731217
MHDN01000064
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_12_39_15 [MHDN]
65465
65541
+
Arg
TCT
[ENA]
¡û
>W1910731242
MHDO01000034
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_12_39_16 [MHDO]
4008
3932
-
Arg
TCT
[ENA]
¡û
>W1910731299
MHDP01000096
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_12_FULL_39_93 [MHDP]
15310
15386
+
Arg
TCT
[ENA]
¡û
Identical group No.276812 (1 seq.)
>W1711412847
MGVC01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
54434
54360
-
Arg
TCT
[ENA]
¡û
Identical group No.282935 (14 seq.)
>W1710917293
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
17821
17746
-
Arg
TCT
[ENA]
¡û
>W1710917341
LNVX01000545
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1720
1645
-
Arg
TCT
[ENA]
¡û
>W1710917346
LNVX01000562
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
469
394
-
Arg
TCT
[ENA]
¡û
>W1710917351
LNVX01000607
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
423
348
-
Arg
TCT
[ENA]
¡û
>W1710917354
LNVX01000629
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
340
265
-
Arg
TCT
[ENA]
¡û
>C08011122
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
408175
408249
+
Arg
TCT
-
¡û
>WENV170715444
LQAB01000854
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
567
642
+
Arg
TCT
[ENA]
¢þ
>WENV170715462
LQAB01001388
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1213
1288
+
Arg
TCT
[ENA]
¢þ
>WENV170715471
LQAB01001616
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
399
474
+
Arg
TCT
[ENA]
¢þ
>WENV170715736
LQAB01012903
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
29286
29361
+
Arg
TCT
[ENA]
¢þ
>WENV170715801
LQAB01015645
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
3861
3936
+
Arg
TCT
[ENA]
¢þ
>C181002079
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
398809
398883
+
Arg
TCT
-
¡û
>C151053034
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
877142
877067
-
Arg
TCT
[Ensembl]
¡û
>ENV000859
AP009510
Environmental sample from ENV division of INSDC
408174
408252
+
Arg
TCT
[ENA]
Identical group No.298297 (4 seq.)
>W1711411915
MGTR01000032
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
4787
4862
+
Arg
TCT
[ENA]
¡û
>W1910727593
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
8180
8255
+
Arg
TCT
[ENA]
¡û
>W1910727832
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
8218
8293
+
Arg
TCT
[ENA]
¡û
>W1910727906
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
8221
8296
+
Arg
TCT
[ENA]
¡û
Identical group No.322166 (3 seq.)
>W1720002829
MGBV01000264
Unclassified
Candidatus Rokubacteria bacterium GWC2_70_16 [MGBV]
2167
2091
-
Arg
TCT
[ENA]
¡û
>W1720002830
MGBY01000329
Unclassified
Candidatus Rokubacteria bacterium RBG_16_73_20 [MGBY]
2172
2096
-
Arg
TCT
[ENA]
¡û
>W1720002865
MGTY01000019
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
2185
2109
-
Arg
TCT
[ENA]
¡û
Identical group No.350332 (5 seq.)
>W1711412682
MGUY01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
3083
3158
+
Arg
TCT
[ENA]
¡û
>W1711412725
MGUZ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
145473
145548
+
Arg
TCT
[ENA]
¡û
>W1711412912
MGVE01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
26942
26867
-
Arg
TCT
[ENA]
¡û
>W1711413105
MGVK01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
72088
72163
+
Arg
TCT
[ENA]
¡û
>W1711413134
MGVL01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
26904
26829
-
Arg
TCT
[ENA]
¡û
Identical group No.361957 (1 seq.)
>W1711413242
MGVN01000243
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
13358
13433
+
Arg
TCT
[ENA]
¡û
Identical group No.388715 (2 seq.)
>W1910727542
MGUM01000062
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
4514
4440
-
Arg
TCT
[ENA]
¡û
>W1910727786
MGUT01000020
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
24341
24267
-
Arg
TCT
[ENA]
¡û
Identical group No.416306 (1 seq.)
>W1711413169
MGVM01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
13743
13670
-
Arg
TCT
[ENA]
¡û
Identical group No.611617 (1 seq.)
>W1910727710
MGUR01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
4994
5067
+
Arg
TCT
[ENA]
¡û
Identical group No.656688 (2 seq.)
>W1711412174
MGTX01000029
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
26906
26832
-
Arg
TCT
[ENA]
¡û
>W1711412495
MGUH01000011
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
8085
8159
+
Arg
TCT
[ENA]
¡û
Identical group No.656769 (2 seq.)
>W1711412465
MGUG01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
41417
41488
+
Arg
TCT
[ENA]
¡û
>W1711412810
MGVB01000058
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
7870
7941
+
Arg
TCT
[ENA]
¡û
Identical group No.656791 (2 seq.)
>W1711412787
MGVA01000059
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
71628
71699
+
Arg
TCT
[ENA]
¡û
>W1711413001
MGVG01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
71667
71738
+
Arg
TCT
[ENA]
¡û
Identical group No.660421 (2 seq.)
>C08004671
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1157693
1157622
-
Arg
TCT
[Ensembl]
¡û
>W09107454
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
475636
475710
+
Arg
TCT
[ENA]
¡û
Identical group No.673793 (3 seq.)
>W1711411951
MGTS01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
86739
86668
-
Arg
TCT
[ENA]
¡û
>W1711412323
MGUB01000116
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
5291
5362
+
Arg
TCT
[ENA]
¡û
>W1711412583
MGUJ01000082
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
5373
5444
+
Arg
TCT
[ENA]
¡û
Identical group No.682100 (8 seq.)
>W1712038734
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
20179
20108
-
Arg
TCT
[ENA]
¡û
>WENV180231298
OBCN01007911
[OBCN] human gut metagenome; human gut
457
530
+
Arg
TCT
[ENA]
¢þ
>WENV181647435
OGNQ01000011
[OGNQ] metagenome; Human gut stool
49492
49419
-
Arg
TCT
[ENA]
¢þ
>WENV182658572
OJML01000133
[OJML] human gut metagenome; feces
44843
44914
+
Arg
TCT
[ENA]
¢þ
>WENV183070760
OLIS01000492
[OLIS] human gut metagenome; feces
13989
13918
-
Arg
TCT
[ENA]
¢þ
>WENV183642054
OQVL01135915
[OQVL] human gut metagenome; human gut
152
79
-
Arg
TCT
[ENA]
¢þ
>WENV183643023
OQVO01000632
[OQVO] human gut metagenome; human gut
1369
1296
-
Arg
TCT
[ENA]
¢þ
>WENV183645434
OQVQ01006954
[OQVQ] human gut metagenome; human gut
3027
3100
+
Arg
TCT
[ENA]
¢þ
Identical group No.686889 (6 seq.)
>W1711412035
MGTU01000011
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
48166
48093
-
Arg
TCT
[ENA]
¡û
>W1711412376
MGUD01000011
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
19366
19438
+
Arg
TCT
[ENA]
¡û
>W1711412414
MGUE01000042
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
19762
19835
+
Arg
TCT
[ENA]
¡û
>W1711412553
MGUI01000041
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
15456
15385
-
Arg
TCT
[ENA]
¡û
>WENV183670978
ORJL011011203
[ORJL] groundwater metagenome; groundwater
897
970
+
Arg
TCT
[ENA]
¢þ
>WENV183685140
ORMF010809775
[ORMF] groundwater metagenome; groundwater
302
229
-
Arg
TCT
[ENA]
¢þ
Identical group No.687070 (1 seq.)
>W1711581897
MNUR01000081
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
12879
12951
+
Arg
TCT
[ENA]
¡û
Identical group No.712129 (1 seq.)
>W1910727923
MGUX01000078
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
1187
1116
-
Arg
TCT
[ENA]
¡û
Identical group No.713528 (3 seq.)
>W1711412102
MGTW01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
33592
33520
-
Arg
TCT
[ENA]
¡û
>W1711412237
MGTZ01000042
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
19516
19588
+
Arg
TCT
[ENA]
¡û
>W1711412611
MGUK01000037
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
4357
4428
+
Arg
TCT
[ENA]
¡û
Identical group No.720992 (1 seq.)
>W1711412290
MGUA01000037
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
49090
49018
-
Arg
TCT
[ENA]
¡û
Identical group No.721030 (1 seq.)
>W1711412671
MGUL01000131
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
7867
7796
-
Arg
TCT
[ENA]
¡û
Identical group No.727679 (2 seq.)
>W1711411992
MGTT01000013
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
16811
16739
-
Arg
TCT
[ENA]
¡û
>W1711412364
MGUC01000033
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
13567
13639
+
Arg
TCT
[ENA]
¡û
Identical group No.736586 (2 seq.)
>W1711412075
MGTV01000012
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
7158
7229
+
Arg
TCT
[ENA]
¡û
>WENV181230956
OFEK01006029
[OFEK] activated sludge metagenome; Anaerobic digester
4448
4376
-
Arg
TCT
[ENA]
¢þ
Identical group No.779133 (1 seq.)
>W1910727608
MGUO01000089
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
4329
4258
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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