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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TGC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458186 (1 seq.)
>W1711412855
MGVC01000051
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
2912
2837
-
Ala
TGC
[ENA]
¡û
Identical group No.464702 (3 seq.)
>C08004669
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1534929
1534857
-
Ala
TGC
[Ensembl]
¡û
>W09107452
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
98393
98465
+
Ala
TGC
[ENA]
¡û
>ENV004251
DQ491456
Environmental sample from ENV division of INSDC
301
378
+
Ala
TGC
[ENA]
Identical group No.464777 (13 seq.)
>W1710917255
LNVX01000212
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3621
3693
+
Ala
TGC
[ENA]
¡û
>W1710917257
LNVX01000213
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
14120
14195
+
Ala
TGC
[ENA]
¡û
>W1710917295
LNVX01000294
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1451
1523
+
Ala
TGC
[ENA]
¡û
>W1710995320
LQAA01000040
Thermodesulfobacteriota
Candidatus Adiutrix intracellularis [LQAA]
2537
2612
+
Ala
TGC
[ENA]
¡û
>C08011114
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
130090
130162
+
Ala
TGC
-
¡û
>WENV170715515
LQAB01003766
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2537
2612
+
Ala
TGC
[ENA]
¢þ
>WENV170715853
LQAB01017591
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
10958
10883
-
Ala
TGC
[ENA]
¢þ
>C181002071
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
128484
128556
+
Ala
TGC
-
¡û
>W1610849977
LQAA01000040
Thermodesulfobacteriota
Candidatus Adiutrix intracellularis [LQAA]
2537
2612
+
Ala
TGC
[ENA]
¡û
>ENV000091
AB360879
Environmental sample from ENV division of INSDC
361
436
+
Ala
TGC
[ENA]
>ENV000092
AB360880
Environmental sample from ENV division of INSDC
362
437
+
Ala
TGC
[ENA]
>ENV000093
AB360881
Environmental sample from ENV division of INSDC
361
436
+
Ala
TGC
[ENA]
>ENV000845
AP009510
Environmental sample from ENV division of INSDC
130090
130165
+
Ala
TGC
[ENA]
Identical group No.481759 (3 seq.)
>W1910727564
MGUN01000010
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
1178
1105
-
Ala
TGC
[ENA]
¡û
>W1910727849
MGUU01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
7874
7801
-
Ala
TGC
[ENA]
¡û
>W1910727877
MGUW01000005
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
1240
1167
-
Ala
TGC
[ENA]
¡û
Identical group No.500931 (3 seq.)
>W1712038746
NFJD01000005
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
26204
26276
+
Ala
TGC
[ENA]
¡û
>WENV183645767
OQVQ01025060
[OQVQ] human gut metagenome; human gut
274
346
+
Ala
TGC
[ENA]
¢þ
>WENV183654399
OQWA01033087
[OQWA] human gut metagenome; human gut
274
346
+
Ala
TGC
[ENA]
¢þ
Identical group No.508671 (1 seq.)
>W1711412192
MGTY01000053
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
17020
16948
-
Ala
TGC
[ENA]
¡û
Identical group No.508901 (2 seq.)
>W1711581893
MNUR01000070
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
3168
3093
-
Ala
TGC
[ENA]
¡û
>WENV183677190
ORJL011723681
[ORJL] groundwater metagenome; groundwater
543
615
+
Ala
TGC
[ENA]
¢þ
Identical group No.552132 (1 seq.)
>W1711413197
MGVN01000036
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
14013
13941
-
Ala
TGC
[ENA]
¡û
Identical group No.552595 (2 seq.)
>WENV170715824
LQAB01016508
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1778
1706
-
Ala
TGC
[ENA]
¢þ
>C151053025
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1529281
1529356
+
Ala
TGC
[Ensembl]
¡û
Identical group No.571713 (3 seq.)
>W1711413331
MGVR01000037
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
11951
11879
-
Ala
TGC
[ENA]
¡û
>WENV180259537
OBEQ011112917
[OBEQ] groundwater metagenome; groundwater
823
896
+
Ala
TGC
[ENA]
¢þ
>WENV170577375
FRDC01005002
[FRDC] freshwater metagenome; water
1530
1603
+
Ala
TGC
[ENA]
¢þ
Identical group No.603613 (2 seq.)
>W1711413077
MGVJ01000075
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
6206
6131
-
Ala
TGC
[ENA]
¡û
>W1711413114
MGVK01000024
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
61453
61528
+
Ala
TGC
[ENA]
¡û
Identical group No.611613 (1 seq.)
>W1910727637
MGUP01000120
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
22835
22763
-
Ala
TGC
[ENA]
¡û
Identical group No.611626 (1 seq.)
>W1910727744
MGUR01000062
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
16310
16238
-
Ala
TGC
[ENA]
¡û
Identical group No.628920 (1 seq.)
>W1711583354
MNXB01000105
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
16928
17001
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK