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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TGG
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254746 (1 seq.)
>W1711412885
MGVD01000075
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
1312
1387
+
Pro
TGG
[ENA]
¡û
Identical group No.276821 (3 seq.)
>W1711413296
MGVQ01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
3416
3340
-
Pro
TGG
[ENA]
¡û
>W1711413386
MGVS01000079
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
305
380
+
Pro
TGG
[ENA]
¡û
>W1711413424
MGVT01000129
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
21144
21220
+
Pro
TGG
[ENA]
¡û
Identical group No.282939 (10 seq.)
>W1710917251
LNVX01000136
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1463
1536
+
Pro
TGG
[ENA]
¡û
>W1710917282
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
260026
259953
-
Pro
TGG
[ENA]
¡û
>C08011134
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
803166
803093
-
Pro
TGG
-
¡û
>WENV170715428
LQAB01000274
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1378
1451
+
Pro
TGG
[ENA]
¢þ
>WENV170715505
LQAB01003295
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
578
651
+
Pro
TGG
[ENA]
¢þ
>WENV170715891
LQAB01019025
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1006
933
-
Pro
TGG
[ENA]
¢þ
>WENV170715901
LQAB01019623
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
209
282
+
Pro
TGG
[ENA]
¢þ
>WENV170715910
LQAB01020056
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
9401
9474
+
Pro
TGG
[ENA]
¢þ
>C181002091
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
792735
792662
-
Pro
TGG
-
¡û
>ENV000875
AP009510
Environmental sample from ENV division of INSDC
803166
803090
-
Pro
TGG
[ENA]
Identical group No.282973 (2 seq.)
>C08004684
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
143980
143907
-
Pro
TGG
[Ensembl]
¡û
>W09107478
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
154273
154200
-
Pro
TGG
[ENA]
¡û
Identical group No.322656 (1 seq.)
>W1711412209
MGTY01000110
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
8446
8519
+
Pro
TGG
[ENA]
¡û
Identical group No.350331 (5 seq.)
>W1711412681
MGUY01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
2739
2814
+
Pro
TGG
[ENA]
¡û
>W1711412724
MGUZ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
145129
145204
+
Pro
TGG
[ENA]
¡û
>W1711412911
MGVE01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
27286
27211
-
Pro
TGG
[ENA]
¡û
>W1711413104
MGVK01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
71744
71819
+
Pro
TGG
[ENA]
¡û
>W1711413133
MGVL01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
27248
27173
-
Pro
TGG
[ENA]
¡û
Identical group No.359634 (1 seq.)
>W1910727929
MGUX01000121
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
3345
3270
-
Pro
TGG
[ENA]
¡û
Identical group No.361956 (1 seq.)
>W1711413241
MGVN01000243
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
13277
13350
+
Pro
TGG
[ENA]
¡û
Identical group No.415184 (1 seq.)
>C151053001
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
188228
188301
+
Pro
TGG
[Ensembl]
¡û
Identical group No.416307 (1 seq.)
>W1711413177
MGVM01000108
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
1862
1935
+
Pro
TGG
[ENA]
¡û
Identical group No.416399 (1 seq.)
>W1711581953
MNUS01000216
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
10301
10228
-
Pro
TGG
[ENA]
¡û
Identical group No.458030 (3 seq.)
>W1711412161
MGTX01000009
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
117626
117553
-
Pro
TGG
[ENA]
¡û
>W1711412498
MGUH01000039
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
10499
10572
+
Pro
TGG
[ENA]
¡û
>WENV180250043
OBEQ010251127
[OBEQ] groundwater metagenome; groundwater
40861
40789
-
Pro
TGG
[ENA]
¢þ
Identical group No.458182 (1 seq.)
>W1711412832
MGVC01000008
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
72005
72079
+
Pro
TGG
[ENA]
¡û
Identical group No.564183 (3 seq.)
>W1711412678
MGUL01000155
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
34222
34149
-
Pro
TGG
[ENA]
¡û
>W1711413355
MGVR01000463
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
1285
1357
+
Pro
TGG
[ENA]
¡û
>WENV170556053
CXWL01004277
[CXWL] groundwater metagenome; biofilm material
5063
5135
+
Pro
TGG
[ENA]
¢þ
Identical group No.569699 (5 seq.)
>W1712038741
NFJD01000004
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
180109
180035
-
Pro
TGG
[ENA]
¡û
>WENV181691077
OGOZ01002079
[OGOZ] human gut metagenome; faeces
7296
7222
-
Pro
TGG
[ENA]
¢þ
>WENV182658522
OJML01000069
[OJML] human gut metagenome; feces
59484
59410
-
Pro
TGG
[ENA]
¢þ
>WENV183070717
OLIS01000345
[OLIS] human gut metagenome; feces
33889
33815
-
Pro
TGG
[ENA]
¢þ
>WENV183642017
OQVL01126691
[OQVL] human gut metagenome; human gut
185
111
-
Pro
TGG
[ENA]
¢þ
Identical group No.611616 (1 seq.)
>W1910727709
MGUR01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
4915
4988
+
Pro
TGG
[ENA]
¡û
Identical group No.628912 (1 seq.)
>W1711583324
MNXB01000005
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
40087
40013
-
Pro
TGG
[ENA]
¡û
Identical group No.652906 (1 seq.)
>W1910727620
MGUO01000198
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
650
724
+
Pro
TGG
[ENA]
¡û
Identical group No.656766 (2 seq.)
>W1711412459
MGUG01000012
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
24747
24821
+
Pro
TGG
[ENA]
¡û
>W1711412567
MGUI01000055
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
10839
10913
+
Pro
TGG
[ENA]
¡û
Identical group No.656785 (4 seq.)
>W1711412009
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
40218
40289
+
Pro
TGG
[ENA]
¡û
>W1711412344
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
195626
195555
-
Pro
TGG
[ENA]
¡û
>W1711412776
MGVA01000035
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
15848
15777
-
Pro
TGG
[ENA]
¡û
>W1711412987
MGVG01000028
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
46787
46858
+
Pro
TGG
[ENA]
¡û
Identical group No.686598 (2 seq.)
>W1730028162
MGTU01000019
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
19454
19525
+
Pro
TGG
[ENA]
¡û
>W1730028175
MGUE01000013
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
17995
17924
-
Pro
TGG
[ENA]
¡û
Identical group No.686602 (1 seq.)
>W1730031817
MNUR01000097
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
3591
3664
+
Pro
TGG
[ENA]
¡û
Identical group No.793617 (8 seq.)
>W1711412895
MGVD01000113
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
6773
6703
-
Pro
TGG
[ENA]
¡û
>W1910739073
MHRH01000047
Unclassified
Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_01_FULL_49_60 [MHRH]
18578
18508
-
Pro
TGG
[ENA]
¡û
>W1910739118
MHRJ01000015
Unclassified
Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 [MHRJ]
2448
2518
+
Pro
TGG
[ENA]
¡û
>W1910739697
MHSB01000049
Unclassified
Candidatus Taylorbacteria bacterium RIFCSPLOWO2_01_FULL_50_130 [MHSB]
15871
15801
-
Pro
TGG
[ENA]
¡û
>W1910739721
MHSC01000054
Unclassified
Candidatus Taylorbacteria bacterium RIFCSPLOWO2_02_50_13 [MHSC]
64867
64797
-
Pro
TGG
[ENA]
¡û
>W1910739945
MHSJ01000051
Unclassified
Candidatus Taylorbacteria bacterium RIFCSPLOWO2_02_FULL_50_120 [MHSJ]
18575
18505
-
Pro
TGG
[ENA]
¡û
>W1910740125
MHSP01000031
Unclassified
Candidatus Taylorbacteria bacterium RIFCSPLOWO2_12_FULL_49_67 [MHSP]
18572
18502
-
Pro
TGG
[ENA]
¡û
>W1511618191
LCQR01000003
Unclassified
Parcubacteria group bacterium GW2011_GWF2_50_9 GW2011_GWF2_50_9 [LCQR]
2700
2770
+
Pro
TGG
[ENA]
¡û
Identical group No.794336 (2 seq.)
>W1730028165
MGTV01000021
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
65829
65901
+
Pro
TGG
[ENA]
¡û
>W1730028179
MGUF01000009
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
5446
5374
-
Pro
TGG
[ENA]
¡û
Identical group No.798822 (1 seq.)
>W1910727850
MGUU01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
987
914
-
Pro
TGG
[ENA]
¡û
Identical group No.799551 (2 seq.)
>W1711411964
MGTS01000031
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
49404
49474
+
Pro
TGG
[ENA]
¡û
>W1711412604
MGUJ01000148
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
40568
40638
+
Pro
TGG
[ENA]
¡û
Identical group No.809866 (1 seq.)
>W1711412286
MGUA01000034
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
48002
47930
-
Pro
TGG
[ENA]
¡û
Identical group No.813047 (2 seq.)
>W1711412126
MGTW01000056
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
81980
81908
-
Pro
TGG
[ENA]
¡û
>W1711412240
MGTZ01000044
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
1541
1613
+
Pro
TGG
[ENA]
¡û
Identical group No.815146 (2 seq.)
>W1910727553
MGUM01000089
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
17287
17217
-
Pro
TGG
[ENA]
¡û
>W1910727784
MGUT01000015
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
30430
30360
-
Pro
TGG
[ENA]
¡û
Identical group No.818213 (1 seq.)
>W1910727707
MGUQ01000104
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
14202
14132
-
Pro
TGG
[ENA]
¡û
Identical group No.833263 (1 seq.)
>W1910727761
MGUS01000044
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
12931
12861
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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