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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TTG
HIT:
35 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458196 (2 seq.)
>W1711413312
MGVQ01000060
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
5017
4943
-
Gln
TTG
[ENA]
¡û
>W1711413415
MGVT01000101
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
5142
5068
-
Gln
TTG
[ENA]
¡û
Identical group No.621302 (1 seq.)
>W1711413394
MGVS01000100
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
9273
9348
+
Gln
TTG
[ENA]
¡û
Identical group No.656797 (1 seq.)
>W1711412843
MGVC01000027
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
4815
4888
+
Gln
TTG
[ENA]
¡û
Identical group No.713533 (1 seq.)
>W1711412879
MGVD01000025
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
18156
18082
-
Gln
TTG
[ENA]
¡û
Identical group No.713540 (1 seq.)
>W1711413227
MGVN01000189
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
1537
1463
-
Gln
TTG
[ENA]
¡û
Identical group No.752081 (1 seq.)
>W1711413164
MGVM01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
1452
1379
-
Gln
TTG
[ENA]
¡û
Identical group No.781005 (2 seq.)
>W1711412180
MGTX01000034
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
38080
38150
+
Gln
TTG
[ENA]
¡û
>W1711412494
MGUH01000007
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
15511
15581
+
Gln
TTG
[ENA]
¡û
Identical group No.781042 (5 seq.)
>W1711412098
MGTV01000049
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
111704
111630
-
Gln
TTG
[ENA]
¡û
>W1711412115
MGTW01000036
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
96774
96701
-
Gln
TTG
[ENA]
¡û
>W1711412236
MGTZ01000038
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
58488
58415
-
Gln
TTG
[ENA]
¡û
>W1711412444
MGUF01000081
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
4811
4737
-
Gln
TTG
[ENA]
¡û
>W1711412469
MGUG01000020
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
77077
77006
-
Gln
TTG
[ENA]
¡û
Identical group No.781049 (2 seq.)
>W1711412792
MGVA01000068
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
139598
139671
+
Gln
TTG
[ENA]
¡û
>W1711413005
MGVG01000053
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
139645
139718
+
Gln
TTG
[ENA]
¡û
Identical group No.782514 (2 seq.)
>C08004652
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
550956
551029
+
Gln
TTG
[Ensembl]
¡û
>W09107486
ABIQ01000004
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
149151
149078
-
Gln
TTG
[ENA]
¡û
Identical group No.782525 (11 seq.)
>W1710917254
LNVX01000158
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2681
2753
+
Gln
TTG
[ENA]
¡û
>W1710917314
LNVX01000369
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
478
550
+
Gln
TTG
[ENA]
¡û
>W1710917322
LNVX01000448
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
23571
23643
+
Gln
TTG
[ENA]
¡û
>C08011126
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
749791
749863
+
Gln
TTG
-
¡û
>WENV170715513
LQAB01003718
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
162
90
-
Gln
TTG
[ENA]
¢þ
>WENV170715771
LQAB01014658
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
573
501
-
Gln
TTG
[ENA]
¢þ
>WENV170715772
LQAB01014694
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2644
2716
+
Gln
TTG
[ENA]
¢þ
>WENV170715866
LQAB01018272
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
662
734
+
Gln
TTG
[ENA]
¢þ
>WENV170715883
LQAB01018930
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
10577
10649
+
Gln
TTG
[ENA]
¢þ
>C181002083
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
740094
740166
+
Gln
TTG
-
¡û
>ENV000869
AP009510
Environmental sample from ENV division of INSDC
749791
749866
+
Gln
TTG
[ENA]
Identical group No.787336 (4 seq.)
>W1711411912
MGTR01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
2652
2580
-
Gln
TTG
[ENA]
¡û
>W1910727582
MGUN01000021
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
10410
10482
+
Gln
TTG
[ENA]
¡û
>W1910727826
MGUU01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
9979
10051
+
Gln
TTG
[ENA]
¡û
>W1910727899
MGUW01000019
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
9335
9407
+
Gln
TTG
[ENA]
¡û
Identical group No.788770 (3 seq.)
>W1711411940
MGTS01000003
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
20988
21059
+
Gln
TTG
[ENA]
¡û
>W1711412302
MGUB01000013
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
1813
1742
-
Gln
TTG
[ENA]
¡û
>W1711412591
MGUJ01000103
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
10208
10279
+
Gln
TTG
[ENA]
¡û
Identical group No.793522 (4 seq.)
>WENV183671983
ORJL011123269
[ORJL] groundwater metagenome; groundwater
817
744
-
Gln
TTG
[ENA]
¢þ
>WENV183696429
ORMF012552965
[ORMF] groundwater metagenome; groundwater
1402
1475
+
Gln
TTG
[ENA]
¢þ
>W1910727671
MGUP01001006
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2235
2308
+
Gln
TTG
[ENA]
¡û
>W1910727856
MGUV01000062
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
1131
1058
-
Gln
TTG
[ENA]
¡û
Identical group No.794455 (2 seq.)
>W1711412026
MGTU01000007
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
11804
11875
+
Gln
TTG
[ENA]
¡û
>W1711412397
MGUE01000014
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
43570
43641
+
Gln
TTG
[ENA]
¡û
Identical group No.794458 (1 seq.)
>W1711412184
MGTY01000005
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
4556
4628
+
Gln
TTG
[ENA]
¡û
Identical group No.794477 (2 seq.)
>W1711412801
MGVB01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
8713
8640
-
Gln
TTG
[ENA]
¡û
>W1711413033
MGVH01000089
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
108
35
-
Gln
TTG
[ENA]
¡û
Identical group No.794480 (1 seq.)
>W1711413053
MGVI01000210
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
402
332
-
Gln
TTG
[ENA]
¡û
Identical group No.794481 (2 seq.)
>W1711413058
MGVI01000465
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
123
196
+
Gln
TTG
[ENA]
¡û
>W1711413287
MGVP01000514
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
926
999
+
Gln
TTG
[ENA]
¡û
Identical group No.794525 (1 seq.)
>W1711581894
MNUR01000075
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
13751
13823
+
Gln
TTG
[ENA]
¡û
Identical group No.802866 (6 seq.)
>W1711412684
MGUY01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
8104
8032
-
Gln
TTG
[ENA]
¡û
>W1711412722
MGUZ01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
19015
19087
+
Gln
TTG
[ENA]
¡û
>W1711412909
MGVE01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
153562
153490
-
Gln
TTG
[ENA]
¡û
>W1711413064
MGVJ01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
1724
1652
-
Gln
TTG
[ENA]
¡û
>W1711413110
MGVK01000019
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
15680
15752
+
Gln
TTG
[ENA]
¡û
>W1711413131
MGVL01000007
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
153524
153452
-
Gln
TTG
[ENA]
¡û
Identical group No.805815 (1 seq.)
>W1910727919
MGUX01000026
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
8499
8426
-
Gln
TTG
[ENA]
¡û
Identical group No.806457 (1 seq.)
>W1711412624
MGUK01000066
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
9655
9582
-
Gln
TTG
[ENA]
¡û
Identical group No.807541 (4 seq.)
>W1712038731
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
249684
249757
+
Gln
TTG
[ENA]
¡û
>WENV180404853
OBSA01070236
[OBSA] human gut metagenome; ENVO:feces
140
67
-
Gln
TTG
[ENA]
¢þ
>WENV182658418
OJML01000006
[OJML] human gut metagenome; feces
137639
137566
-
Gln
TTG
[ENA]
¢þ
>WENV183070629
OLIS01000158
[OLIS] human gut metagenome; feces
9546
9473
-
Gln
TTG
[ENA]
¢þ
Identical group No.809865 (2 seq.)
>W1711412279
MGUA01000027
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
104059
103986
-
Gln
TTG
[ENA]
¡û
>W1711412555
MGUI01000044
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
39213
39285
+
Gln
TTG
[ENA]
¡û
Identical group No.809880 (2 seq.)
>W1711412660
MGUL01000081
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
18657
18727
+
Gln
TTG
[ENA]
¡û
>W1711413349
MGVR01000270
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
199
129
-
Gln
TTG
[ENA]
¡û
Identical group No.813060 (2 seq.)
>W1711412005
MGTT01000026
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
15476
15548
+
Gln
TTG
[ENA]
¡û
>W1711412350
MGUC01000024
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
13746
13818
+
Gln
TTG
[ENA]
¡û
Identical group No.813063 (2 seq.)
>W1711412954
MGVF01000068
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
9115
9187
+
Gln
TTG
[ENA]
¡û
>W1711413275
MGVO01000120
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
11352
11280
-
Gln
TTG
[ENA]
¡û
Identical group No.815143 (1 seq.)
>W1910727533
MGUM01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
8349
8421
+
Gln
TTG
[ENA]
¡û
Identical group No.823821 (1 seq.)
>W1910727737
MGUR01000057
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
58086
58015
-
Gln
TTG
[ENA]
¡û
Identical group No.824010 (1 seq.)
>C151053022
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1446571
1446645
+
Gln
TTG
[Ensembl]
¡û
Identical group No.824314 (1 seq.)
>W1711581914
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
4960
5033
+
Gln
TTG
[ENA]
¡û
Identical group No.824316 (1 seq.)
>W1711581924
MNUS01000057
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
41281
41211
-
Gln
TTG
[ENA]
¡û
Identical group No.828547 (1 seq.)
>W1711583342
MNXB01000066
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
7128
7200
+
Gln
TTG
[ENA]
¡û
Identical group No.837031 (1 seq.)
>W1910727610
MGUO01000115
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
1833
1763
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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