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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = TTT
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458187 (2 seq.)
>W1711412861
MGVC01000066
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
2987
3061
+
Lys
TTT
[ENA]
¡û
>W1711413175
MGVM01000099
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
7239
7167
-
Lys
TTT
[ENA]
¡û
Identical group No.458192 (2 seq.)
>W1711413307
MGVQ01000036
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
22512
22586
+
Lys
TTT
[ENA]
¡û
>W1711413400
MGVT01000042
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
2905
2831
-
Lys
TTT
[ENA]
¡û
Identical group No.464782 (10 seq.)
>W1710917312
LNVX01000364
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
13020
12946
-
Lys
TTT
[ENA]
¡û
>W1710917333
LNVX01000521
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1886
1960
+
Lys
TTT
[ENA]
¡û
>W1710917337
LNVX01000523
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
1897
1823
-
Lys
TTT
[ENA]
¡û
>W1710917339
LNVX01000524
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
857
931
+
Lys
TTT
[ENA]
¡û
>C08011138
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
769654
769582
-
Lys
TTT
-
¡û
>WENV170715760
LQAB01014124
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
932
1006
+
Lys
TTT
[ENA]
¢þ
>WENV170715787
LQAB01015341
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
821
895
+
Lys
TTT
[ENA]
¢þ
>WENV170715885
LQAB01018930
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
26311
26237
-
Lys
TTT
[ENA]
¢þ
>C181002095
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
759244
759172
-
Lys
TTT
-
¡û
>ENV000871
AP009510
Environmental sample from ENV division of INSDC
769654
769579
-
Lys
TTT
[ENA]
Identical group No.481761 (4 seq.)
>W1711411904
MGTR01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
16514
16440
-
Lys
TTT
[ENA]
¡û
>W1910727569
MGUN01000015
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
170812
170886
+
Lys
TTT
[ENA]
¡û
>W1910727855
MGUU01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
26308
26234
-
Lys
TTT
[ENA]
¡û
>W1910727885
MGUW01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
26323
26249
-
Lys
TTT
[ENA]
¡û
Identical group No.539212 (6 seq.)
>W1711412704
MGUY01000082
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
288
362
+
Lys
TTT
[ENA]
¡û
>W1711412736
MGUZ01000013
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
62819
62745
-
Lys
TTT
[ENA]
¡û
>W1711412923
MGVE01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
62800
62726
-
Lys
TTT
[ENA]
¡û
>W1711413078
MGVJ01000084
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
181
255
+
Lys
TTT
[ENA]
¡û
>W1711413096
MGVK01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
62826
62752
-
Lys
TTT
[ENA]
¡û
>W1711413143
MGVL01000011
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
63048
62974
-
Lys
TTT
[ENA]
¡û
Identical group No.552134 (1 seq.)
>W1711413199
MGVN01000051
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
71912
71985
+
Lys
TTT
[ENA]
¡û
Identical group No.552587 (2 seq.)
>W1710917335
LNVX01000522
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
409
481
+
Lys
TTT
[ENA]
¡û
>WENV170715783
LQAB01015301
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4113
4185
+
Lys
TTT
[ENA]
¢þ
Identical group No.582265 (2 seq.)
>W1910727538
MGUM01000033
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
31254
31178
-
Lys
TTT
[ENA]
¡û
>W1910727791
MGUT01000038
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
9245
9321
+
Lys
TTT
[ENA]
¡û
Identical group No.612188 (1 seq.)
>C151053036
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
791546
791474
-
Lys
TTT
[Ensembl]
¡û
Identical group No.613457 (1 seq.)
>W1711581912
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
4699
4771
+
Lys
TTT
[ENA]
¡û
Identical group No.613464 (2 seq.)
>W1711581946
MNUS01000159
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
24307
24380
+
Lys
TTT
[ENA]
¡û
>WENV180591669
OCOV01070737
[OCOV] marine metagenome; ENVO:01000301
148
75
-
Lys
TTT
[ENA]
¢þ
Identical group No.621299 (1 seq.)
>W1711413382
MGVS01000073
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
21743
21669
-
Lys
TTT
[ENA]
¡û
Identical group No.628558 (1 seq.)
>W1730031956
MNXB01000036
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
8693
8767
+
Lys
TTT
[ENA]
¡û
Identical group No.639318 (1 seq.)
>W1910727781
MGUS01000129
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
1760
1835
+
Lys
TTT
[ENA]
¡û
Identical group No.656682 (2 seq.)
>W1711412153
MGTX01000004
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
158831
158903
+
Lys
TTT
[ENA]
¡û
>W1711412492
MGUH01000005
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
4060
4132
+
Lys
TTT
[ENA]
¡û
Identical group No.656768 (8 seq.)
>W1711412080
MGTV01000016
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
20008
20080
+
Lys
TTT
[ENA]
¡û
>W1711412123
MGTW01000052
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
13678
13604
-
Lys
TTT
[ENA]
¡û
>W1711412252
MGTZ01000057
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
14142
14068
-
Lys
TTT
[ENA]
¡û
>W1711412258
MGUA01000005
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
35388
35459
+
Lys
TTT
[ENA]
¡û
>W1711412449
MGUF01000106
Elusimicrobiota
Elusimicrobia bacterium GWC2_63_65 [MGUF]
1304
1376
+
Lys
TTT
[ENA]
¡û
>W1711412463
MGUG01000016
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
4935
5007
+
Lys
TTT
[ENA]
¡û
>W1711412562
MGUI01000049
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
16261
16189
-
Lys
TTT
[ENA]
¡û
>WENV181230745
OFEK01002860
[OFEK] activated sludge metagenome; Anaerobic digester
768
839
+
Lys
TTT
[ENA]
¢þ
Identical group No.656788 (15 seq.)
>W1711411948
MGTS01000014
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
35299
35226
-
Lys
TTT
[ENA]
¡û
>W1711412015
MGTT01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
137769
137696
-
Lys
TTT
[ENA]
¡û
>W1711412024
MGTU01000002
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
47846
47917
+
Lys
TTT
[ENA]
¡û
>W1711412327
MGUB01000141
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
8145
8072
-
Lys
TTT
[ENA]
¡û
>W1711412342
MGUC01000017
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
98075
98148
+
Lys
TTT
[ENA]
¡û
>W1711412388
MGUD01000028
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
11439
11366
-
Lys
TTT
[ENA]
¡û
>W1711412425
MGUE01000049
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
36357
36428
+
Lys
TTT
[ENA]
¡û
>W1711412779
MGVA01000038
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
38923
38994
+
Lys
TTT
[ENA]
¡û
>W1711412795
MGVB01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
2445
2517
+
Lys
TTT
[ENA]
¡û
>W1711412991
MGVG01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
38936
39007
+
Lys
TTT
[ENA]
¡û
>W1711413021
MGVH01000041
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
1596
1668
+
Lys
TTT
[ENA]
¡û
>W1711581881
MNUR01000041
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
20704
20775
+
Lys
TTT
[ENA]
¡û
>WENV183663833
ORJL010320512
[ORJL] groundwater metagenome; groundwater
3435
3364
-
Lys
TTT
[ENA]
¢þ
>WENV183689196
ORMF011404684
[ORMF] groundwater metagenome; groundwater
78
7
-
Lys
TTT
[ENA]
¢þ
>W1910727641
MGUP01000172
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
1456
1527
+
Lys
TTT
[ENA]
¡û
Identical group No.660480 (2 seq.)
>C08004648
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
388961
389033
+
Lys
TTT
[Ensembl]
¡û
>W09107467
ABIQ01000002
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
399262
399334
+
Lys
TTT
[ENA]
¡û
Identical group No.682128 (11 seq.)
>W1712038706
NFJD01000001
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
146117
146189
+
Lys
TTT
[ENA]
¡û
>WENV180231218
OBCN01004029
[OBCN] human gut metagenome; human gut
1735
1809
+
Lys
TTT
[ENA]
¢þ
>WENV180404630
OBSA01017657
[OBSA] human gut metagenome; ENVO:feces
556
630
+
Lys
TTT
[ENA]
¢þ
>WENV181647617
OGNQ01000216
[OGNQ] metagenome; Human gut stool
50377
50451
+
Lys
TTT
[ENA]
¢þ
>WENV181691367
OGOZ01005799
[OGOZ] human gut metagenome; faeces
4261
4189
-
Lys
TTT
[ENA]
¢þ
>WENV182658411
OJML01000003
[OJML] human gut metagenome; feces
137747
137819
+
Lys
TTT
[ENA]
¢þ
>WENV183070719
OLIS01000346
[OLIS] human gut metagenome; feces
7212
7284
+
Lys
TTT
[ENA]
¢þ
>WENV183640142
OQVL01001442
[OQVL] human gut metagenome; human gut
11131
11205
+
Lys
TTT
[ENA]
¢þ
>WENV183643120
OQVO01001751
[OQVO] human gut metagenome; human gut
3110
3036
-
Lys
TTT
[ENA]
¢þ
>WENV183645903
OQVQ01041584
[OQVQ] human gut metagenome; human gut
11
83
+
Lys
TTT
[ENA]
¢þ
>WENV183657758
OQWI01037552
[OQWI] human gut metagenome; human gut
107
179
+
Lys
TTT
[ENA]
¢þ
Identical group No.686893 (1 seq.)
>W1711412182
MGTY01000001
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
8955
8884
-
Lys
TTT
[ENA]
¡û
Identical group No.686937 (1 seq.)
>W1711413047
MGVI01000076
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
2713
2784
+
Lys
TTT
[ENA]
¡û
Identical group No.713530 (3 seq.)
>W1711412631
MGUK01000084
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
147850
147776
-
Lys
TTT
[ENA]
¡û
>W1711413284
MGVP01000321
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_62_6 [MGVP]
2357
2428
+
Lys
TTT
[ENA]
¡û
>WENV181416015
OGCL01043177
[OGCL] hot springs metagenome; Hot spring water
176
247
+
Lys
TTT
[ENA]
¢þ
Identical group No.721023 (1 seq.)
>W1711412643
MGUL01000022
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
9651
9577
-
Lys
TTT
[ENA]
¡û
Identical group No.721024 (2 seq.)
>W1711412645
MGUL01000029
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
13741
13813
+
Lys
TTT
[ENA]
¡û
>W1711413352
MGVR01000394
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
6774
6846
+
Lys
TTT
[ENA]
¡û
Identical group No.751122 (3 seq.)
>WENV180250594
OBEQ010297259
[OBEQ] groundwater metagenome; groundwater
301
230
-
Lys
TTT
[ENA]
¢þ
>WENV183692674
ORMF011957525
[ORMF] groundwater metagenome; groundwater
422
493
+
Lys
TTT
[ENA]
¢þ
>W1910727633
MGUP01000089
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
909
980
+
Lys
TTT
[ENA]
¡û
Identical group No.751124 (4 seq.)
>WENV180249580
OBEQ010210609
[OBEQ] groundwater metagenome; groundwater
15197
15269
+
Lys
TTT
[ENA]
¢þ
>WENV180262047
OBEQ011350729
[OBEQ] groundwater metagenome; groundwater
101
30
-
Lys
TTT
[ENA]
¢þ
>WENV170555675
CXWL01001704
[CXWL] groundwater metagenome; biofilm material
83653
83581
-
Lys
TTT
[ENA]
¢þ
>W1910727659
MGUP01000847
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
101
29
-
Lys
TTT
[ENA]
¡û
Identical group No.751126 (1 seq.)
>W1910727715
MGUR01000008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
18177
18251
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK