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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.40656 (1 seq.)
>W1610032588
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1751827
1751917
+
Ile
TAT
[ENA]
¡û
Identical group No.41216 (1 seq.)
>W1910546386
FZMP01000194
Euryarchaeota
Candidatus Methanoperedens nitroreducens [FZMP]
11903
11991
+
Ile
TAT
[ENA]
¡û
Identical group No.236994 (2 seq.)
>W1930003887
FNOF01000003
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
255788
255863
+
Ile
TAT
[ENA]
¡û
>W1630000536
AOLQ01000004
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
255704
255779
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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