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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = ACG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228468 (3 seq.)
>W2011665662
SORS01000008
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
19112
19186
+
Arg
ACG
[ENA]
¡û
>W2011665704
SORT01000034
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
12079
12153
+
Arg
ACG
[ENA]
¡û
>W2011665740
SORU01000048
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
4345
4419
+
Arg
ACG
[ENA]
¡û
Identical group No.285666 (1 seq.)
>W2011536460
SCKI01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
60067
59993
-
Arg
ACG
[ENA]
¡û
Identical group No.301380 (1 seq.)
>W2011536515
SCKJ01000009
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
881
807
-
Arg
ACG
[ENA]
¡û
Identical group No.462408 (1 seq.)
>W2011536556
SCKK01000045
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
14991
15063
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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