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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89125 (1 seq.)
>W2011536543
SCKK01000022
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
37502
37586
+
Leu
CAA
[ENA]
¡û
Identical group No.89213 (3 seq.)
>W2011665660
SORS01000004
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
40663
40747
+
Leu
CAA
[ENA]
¡û
>W2011665678
SORT01000003
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
70036
70120
+
Leu
CAA
[ENA]
¡û
>W2011665718
SORU01000004
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
34468
34384
-
Leu
CAA
[ENA]
¡û
Identical group No.108815 (1 seq.)
>W2011536511
SCKJ01000009
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
79815
79899
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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