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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184563 (2 seq.)
>W2011665699
SORT01000018
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
28564
28489
-
Val
CAC
[ENA]
¡û
>W2011665735
SORU01000023
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
18521
18596
+
Val
CAC
[ENA]
¡û
Identical group No.228179 (1 seq.)
>W2011536531
SCKK01000012
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
57417
57491
+
Val
CAC
[ENA]
¡û
Identical group No.285661 (1 seq.)
>W2011536433
SCKI01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
310019
310093
+
Val
CAC
[ENA]
¡û
Identical group No.301376 (1 seq.)
>W2011536475
SCKJ01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
507315
507389
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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