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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98045 (2 seq.)
>W2011665687
SORT01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
53367
53283
-
Leu
CAG
[ENA]
¡û
>W2011665727
SORU01000017
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
14436
14520
+
Leu
CAG
[ENA]
¡û
Identical group No.104550 (2 seq.)
>W2011536637
SCKN01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L19 [SCKN]
288886
288970
+
Leu
CAG
[ENA]
¡û
>W2011536672
SCKO01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
54673
54757
+
Leu
CAG
[ENA]
¡û
Identical group No.108813 (1 seq.)
>W2011536488
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
16641
16557
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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