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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261438 (2 seq.)
>W2011665683
SORT01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
66981
67055
+
Met
CAT
[ENA]
¡û
>W2011665728
SORU01000017
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
580
506
-
Met
CAT
[ENA]
¡û
Identical group No.261440 (2 seq.)
>W2011665708
SORT01000055
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
5326
5400
+
Ile2
CAT
[ENA]
¡û
>W2011665731
SORU01000019
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
30732
30806
+
Ile2
CAT
[ENA]
¡û
Identical group No.564901 (1 seq.)
>W2011536501
SCKJ01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
70189
70118
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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