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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228181 (1 seq.)
>W2011536539
SCKK01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
40207
40133
-
Arg
CCG
[ENA]
¡û
Identical group No.228470 (3 seq.)
>W2011665668
SORS01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
10596
10522
-
Arg
CCG
[ENA]
¡û
>W2011665700
SORT01000020
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
6751
6677
-
Arg
CCG
[ENA]
¡û
>W2011665720
SORU01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
57903
57977
+
Arg
CCG
[ENA]
¡û
Identical group No.285664 (1 seq.)
>W2011536453
SCKI01000010
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
82934
83008
+
Arg
CCG
[ENA]
¡û
Identical group No.301378 (1 seq.)
>W2011536487
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
191236
191162
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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