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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CCG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354579 (3 seq.)
>WENV181317440
OFJY01001317
[OFJY] marine metagenome; seawater
1189
1113
-
Arg
CCG
[ENA]
¡û
>W2011536600
SCKM01000020
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L11 [SCKM]
5308
5234
-
Arg
CCG
[ENA]
¡û
>W2011536730
SCKP01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
33867
33941
+
Arg
CCG
[ENA]
¡û
Identical group No.354584 (12 seq.)
>WENV181305263
OFIF01022266
[OFIF] marine metagenome; seawater
196
270
+
Arg
CCG
[ENA]
¡û
>WENV181305933
OFII01004040
[OFII] marine metagenome; seawater
58
132
+
Arg
CCG
[ENA]
¡û
>WENV181306246
OFIK01000934
[OFIK] marine metagenome; seawater
900
826
-
Arg
CCG
[ENA]
¡û
>WENV181310106
OFIZ01002285
[OFIZ] marine metagenome; seawater
1065
991
-
Arg
CCG
[ENA]
¡û
>WENV181310746
OFJA01003168
[OFJA] marine metagenome; seawater
904
978
+
Arg
CCG
[ENA]
¡û
>WENV181314809
OFJL01003440
[OFJL] marine metagenome; seawater
268
192
-
Arg
CCG
[ENA]
¡û
>WENV181316270
OFJT01011189
[OFJT] marine metagenome; seawater
167
93
-
Arg
CCG
[ENA]
¡û
>WENV181317490
OFJY01002900
[OFJY] marine metagenome; seawater
1631
1707
+
Arg
CCG
[ENA]
¡û
>WENV181403494
OFUB01000610
[OFUB] marine metagenome; seawater
145
69
-
Arg
CCG
[ENA]
¡û
>WENV170911172
MDTE01101911
[MDTE] marine metagenome; seawater
94
168
+
Arg
CCG
[ENA]
¡û
>W2011536647
SCKN01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L19 [SCKN]
200739
200663
-
Arg
CCG
[ENA]
¡û
>W2011536671
SCKO01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
28518
28442
-
Arg
CCG
[ENA]
¡û
Identical group No.358924 (1 seq.)
>W2011536539
SCKK01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
40207
40133
-
Arg
CCG
[ENA]
¡û
Identical group No.359447 (3 seq.)
>W2011665668
SORS01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
10596
10522
-
Arg
CCG
[ENA]
¡û
>W2011665700
SORT01000020
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
6751
6677
-
Arg
CCG
[ENA]
¡û
>W2011665720
SORU01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
57903
57977
+
Arg
CCG
[ENA]
¡û
Identical group No.377660 (15 seq.)
>WENV180056681
MPLW02051409
[MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter
3302
3378
+
Arg
CCG
[ENA]
¡û
>WENV180061145
MPLX02209058
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
2983
2907
-
Arg
CCG
[ENA]
¡û
>WENV180067151
MPLY02182543
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
549
475
-
Arg
CCG
[ENA]
¡û
>WENV180074664
MPMA02159343
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
4791
4715
-
Arg
CCG
[ENA]
¡û
>WENV180093885
MPMF02351869
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
285
209
-
Arg
CCG
[ENA]
¡û
>WENV183796444
PVBE010248965
[PVBE] marine metagenome; water
3061
2985
-
Arg
CCG
[ENA]
¡û
>WENV183802376
PVBE010754337
[PVBE] marine metagenome; water
1377
1303
-
Arg
CCG
[ENA]
¡û
>WENV170382780
CETX01045869
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
696
772
+
Arg
CCG
[ENA]
¡û
>WENV170616961
FUWD012910645
[FUWD] metagenome; unknown
632
556
-
Arg
CCG
[ENA]
¡û
>WENV170624788
FUWD013186854
[FUWD] metagenome; unknown
82
6
-
Arg
CCG
[ENA]
¡û
>WENV170633062
FUWD013390842
[FUWD] metagenome; unknown
82
6
-
Arg
CCG
[ENA]
¡û
>WENV170664623
JYMV01018326
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
30714
30790
+
Arg
CCG
[ENA]
¡û
>WENV170946038
MDUQ01011875
[MDUQ] marine metagenome; 100 m water sample from station 6
482
406
-
Arg
CCG
[ENA]
¡û
>WENV170946726
MDUS01002250
[MDUS] marine metagenome; 300 m water sample from station 6
3091
3167
+
Arg
CCG
[ENA]
¡û
>W2011536835
SCKS01000030
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C9 [SCKS]
13173
13249
+
Arg
CCG
[ENA]
¡û
Identical group No.390338 (5 seq.)
>WENV180077085
MPMB02029324
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
8195
8269
+
Arg
CCG
[ENA]
¡û
>WENV183794676
PVBE010112575
[PVBE] marine metagenome; water
1804
1728
-
Arg
CCG
[ENA]
¡û
>WENV183795328
PVBE010164233
[PVBE] marine metagenome; water
1141
1065
-
Arg
CCG
[ENA]
¡û
>WENV170667321
JYMV01045857
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
695
619
-
Arg
CCG
[ENA]
¡û
>W2011536795
SCKR01000020
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C11 [SCKR]
11245
11321
+
Arg
CCG
[ENA]
¡û
Identical group No.461306 (1 seq.)
>W2011536453
SCKI01000010
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
82934
83008
+
Arg
CCG
[ENA]
¡û
Identical group No.492243 (1 seq.)
>W2011536487
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
191236
191162
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK