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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228178 (1 seq.)
>W2011536527
SCKK01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
84613
84539
-
Arg
CCT
[ENA]
¡û
Identical group No.228471 (3 seq.)
>W2011665670
SORS01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
11714
11788
+
Arg
CCT
[ENA]
¡û
>W2011665688
SORT01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
44448
44522
+
Arg
CCT
[ENA]
¡û
>W2011665726
SORU01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
19943
20017
+
Arg
CCT
[ENA]
¡û
Identical group No.285668 (1 seq.)
>W2011536469
SCKI01000015
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
40094
40169
+
Arg
CCT
[ENA]
¡û
Identical group No.301377 (1 seq.)
>W2011536485
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
214884
214809
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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