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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21339 (1 seq.)
>W2011536461
SCKI01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
59403
59314
-
Ser
CGA
[ENA]
¡û
Identical group No.32474 (1 seq.)
>W2011536516
SCKJ01000009
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
216
128
-
Ser
CGA
[ENA]
¡û
Identical group No.38444 (1 seq.)
>W2011536557
SCKK01000045
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
26412
26499
+
Ser
CGA
[ENA]
¡û
Identical group No.38493 (3 seq.)
>W2011665663
SORS01000008
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
19972
20059
+
Ser
CGA
[ENA]
¡û
>W2011665705
SORT01000034
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
12863
12950
+
Ser
CGA
[ENA]
¡û
>W2011665741
SORU01000048
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
5414
5501
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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