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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228469 (2 seq.)
>W2011665667
SORS01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
3304
3378
+
Pro
CGG
[ENA]
¡û
>W2011665722
SORU01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
65196
65122
-
Pro
CGG
[ENA]
¡û
Identical group No.285665 (2 seq.)
>W2011536454
SCKI01000010
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
89061
88987
-
Pro
CGG
[ENA]
¡û
>W2011536483
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
186392
186468
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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