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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.346961 (3 seq.)
>W2011665664
SORS01000008
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
16975
16902
-
Glu
CTC
[ENA]
¡û
>W2011665706
SORT01000034
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
9942
9869
-
Glu
CTC
[ENA]
¡û
>W2011665742
SORU01000048
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
2209
2136
-
Glu
CTC
[ENA]
¡û
Identical group No.462407 (1 seq.)
>W2011536555
SCKK01000045
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
14298
14372
+
Glu
CTC
[ENA]
¡û
Identical group No.508485 (1 seq.)
>W2011536459
SCKI01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
60201
60129
-
Glu
CTC
[ENA]
¡û
Identical group No.520832 (1 seq.)
>W2011536514
SCKJ01000009
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
1015
943
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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