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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CTG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.807800 (3 seq.)
>W2011411380
RDRY01000027
Fidelibacterota
Candidatus Marinimicrobia bacterium PRS2 [RDRY]
957
1029
+
Gln
CTG
[ENA]
¡û
>W2011536606
SCKM01000043
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L11 [SCKM]
9032
8960
-
Gln
CTG
[ENA]
¡û
>W2011536739
SCKP01000046
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
9030
9102
+
Gln
CTG
[ENA]
¡û
Identical group No.885594 (12 seq.)
>WENV181306299
OFIK01005610
[OFIK] marine metagenome; seawater
561
632
+
Gln
CTG
[ENA]
¡û
>WENV181309996
OFIZ01000140
[OFIZ] marine metagenome; seawater
1241
1170
-
Gln
CTG
[ENA]
¡û
>WENV181312618
OFJC01009702
[OFJC] marine metagenome; seawater
439
368
-
Gln
CTG
[ENA]
¡û
>WENV181313371
OFJG01000454
[OFJG] marine metagenome; seawater
779
708
-
Gln
CTG
[ENA]
¡û
>WENV181314118
OFJJ01000778
[OFJJ] marine metagenome; seawater
1649
1720
+
Gln
CTG
[ENA]
¡û
>WENV181314976
OFJL01018372
[OFJL] marine metagenome; seawater
365
294
-
Gln
CTG
[ENA]
¡û
>WENV181316690
OFJV01000675
[OFJV] marine metagenome; seawater
1967
1896
-
Gln
CTG
[ENA]
¡û
>WENV181317648
OFJY01012325
[OFJY] marine metagenome; seawater
206
277
+
Gln
CTG
[ENA]
¡û
>WENV181318052
OFJZ01000172
[OFJZ] marine metagenome; seawater
2604
2675
+
Gln
CTG
[ENA]
¡û
>WENV181403668
OFUB01006347
[OFUB] marine metagenome; seawater
136
207
+
Gln
CTG
[ENA]
¡û
>W2011536629
SCKN01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L19 [SCKN]
120991
121062
+
Gln
CTG
[ENA]
¡û
>W2011536704
SCKO01000110
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
953
882
-
Gln
CTG
[ENA]
¡û
Identical group No.887227 (1 seq.)
>W2011536554
SCKK01000045
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
14117
14188
+
Gln
CTG
[ENA]
¡û
Identical group No.905865 (2 seq.)
>W2011665702
SORT01000026
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
16911
16840
-
Gln
CTG
[ENA]
¡û
>W2011665736
SORU01000033
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
905
976
+
Gln
CTG
[ENA]
¡û
Identical group No.920749 (1 seq.)
>W2011536458
SCKI01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
91019
90948
-
Gln
CTG
[ENA]
¡û
Identical group No.930079 (1 seq.)
>W2011536513
SCKJ01000009
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
31650
31579
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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