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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = CTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228177 (1 seq.)
>W2011536525
SCKK01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
100312
100386
+
Lys
CTT
[ENA]
¡û
Identical group No.346964 (3 seq.)
>W2011665675
SORS01000056
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
2526
2453
-
Lys
CTT
[ENA]
¡û
>W2011665707
SORT01000046
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
2273
2200
-
Lys
CTT
[ENA]
¡û
>W2011665716
SORU01000003
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
22622
22697
+
Lys
CTT
[ENA]
¡û
Identical group No.411889 (1 seq.)
>W2011536451
SCKI01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
18101
18028
-
Lys
CTT
[ENA]
¡û
Identical group No.429656 (1 seq.)
>W2011536517
SCKJ01000011
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
63790
63717
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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