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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = GAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.189484 (2 seq.)
>W2011536470
SCKI01000015
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
56706
56781
+
Val
GAC
[ENA]
¡û
>W2011536486
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
200389
200314
-
Val
GAC
[ENA]
¡û
Identical group No.228180 (1 seq.)
>W2011536538
SCKK01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
48551
48477
-
Val
GAC
[ENA]
¡û
Identical group No.228188 (2 seq.)
>W2011536578
SCKL01000061
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L14 [SCKL]
3769
3843
+
Val
GAC
[ENA]
¡û
>W2011536729
SCKP01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
26088
26162
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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