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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = GCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228187 (1 seq.)
>W2011536565
SCKK01000074
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
2331
2405
+
Cys
GCA
[ENA]
¡û
Identical group No.285667 (1 seq.)
>W2011536466
SCKI01000014
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
49452
49526
+
Cys
GCA
[ENA]
¡û
Identical group No.301379 (1 seq.)
>W2011536497
SCKJ01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
269502
269576
+
Cys
GCA
[ENA]
¡û
Identical group No.384396 (2 seq.)
>W2011665685
SORT01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
69338
69411
+
Cys
GCA
[ENA]
¡û
>W2011665738
SORU01000040
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
8156
8083
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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