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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7610 (1 seq.)
>W2011536551
SCKK01000042
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
18235
18144
-
Ser
GCT
[ENA]
¡û
Identical group No.7615 (2 seq.)
>W2011665656
SORS01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
59504
59595
+
Ser
GCT
[ENA]
¡û
>W2011665703
SORT01000028
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
1200
1291
+
Ser
GCT
[ENA]
¡û
Identical group No.55077 (2 seq.)
>W2011536587
SCKL01000136
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L14 [SCKL]
361
275
-
Ser
GCT
[ENA]
¡û
>W2011536719
SCKP01000011
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
15237
15151
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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