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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = GGA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.40404 (1 seq.)
>W2011536561
SCKK01000052
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
17273
17361
+
Ser
GGA
[ENA]
¡û
Identical group No.48977 (1 seq.)
>W2011536463
SCKI01000013
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
51102
51014
-
Ser
GGA
[ENA]
¡û
Identical group No.51656 (1 seq.)
>W2011536480
SCKJ01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
90139
90227
+
Ser
GGA
[ENA]
¡û
Identical group No.59341 (28 seq.)
>W131193829
ASPI01000002
Unclassified
Marinimicrobia bacterium SCGC AAA003-E22 [ASPI]
39625
39536
-
Ser
GGA
[ENA]
¡û
>WENV180063204
MPLX02338623
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
782
871
+
Ser
GGA
[ENA]
¡û
>WENV180064242
MPLX02403083
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
909
820
-
Ser
GGA
[ENA]
¡û
>WENV180074101
MPMA02121214
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
896
985
+
Ser
GGA
[ENA]
¡û
>WENV180079965
MPMB02196837
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
319
230
-
Ser
GGA
[ENA]
¡û
>WENV180085158
MPMD02288909
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
460
371
-
Ser
GGA
[ENA]
¡û
>WENV180648100
OCSI01079311
[OCSI] metagenome; diffuse fluid
85
174
+
Ser
GGA
[ENA]
¡û
>WENV181306398
OFIK01017318
[OFIK] marine metagenome; seawater
13
100
+
Ser
GGA
[ENA]
¡û
>WENV181310331
OFIZ01016201
[OFIZ] marine metagenome; seawater
274
361
+
Ser
GGA
[ENA]
¡û
>WENV181310813
OFJA01007467
[OFJA] marine metagenome; seawater
139
226
+
Ser
GGA
[ENA]
¡û
>WENV181315384
OFJO01009145
[OFJO] marine metagenome; seawater
158
71
-
Ser
GGA
[ENA]
¡û
>WENV181316247
OFJT01008363
[OFJT] marine metagenome; seawater
350
263
-
Ser
GGA
[ENA]
¡û
>WENV181318284
OFJZ01009360
[OFJZ] marine metagenome; seawater
577
490
-
Ser
GGA
[ENA]
¡û
>WENV183798460
PVBE010421433
[PVBE] marine metagenome; water
107
18
-
Ser
GGA
[ENA]
¡û
>WENV183800012
PVBE010556596
[PVBE] marine metagenome; water
1261
1172
-
Ser
GGA
[ENA]
¡û
>WENV183806351
PVBE011108972
[PVBE] marine metagenome; water
621
708
+
Ser
GGA
[ENA]
¡û
>WENV170309012
CESL01086247
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
137
226
+
Ser
GGA
[ENA]
¡û
>WENV170383297
CETX01095425
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
294
+
Ser
GGA
[ENA]
¡û
>WENV170604468
FUWD010401035
[FUWD] metagenome; unknown
824
735
-
Ser
GGA
[ENA]
¡û
>WENV170604569
FUWD010409310
[FUWD] metagenome; unknown
369
458
+
Ser
GGA
[ENA]
¡û
>WENV170606778
FUWD010731687
[FUWD] metagenome; unknown
391
480
+
Ser
GGA
[ENA]
¡û
>WENV170610519
FUWD011926572
[FUWD] metagenome; unknown
149
238
+
Ser
GGA
[ENA]
¡û
>WENV170610630
FUWD011972445
[FUWD] metagenome; unknown
278
367
+
Ser
GGA
[ENA]
¡û
>WENV170665305
JYMV01024576
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
1464
1375
-
Ser
GGA
[ENA]
¡û
>WENV170666039
JYMV01032540
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2407
2318
-
Ser
GGA
[ENA]
¡û
>WENV170946031
MDUQ01010626
[MDUQ] marine metagenome; 100 m water sample from station 6
258
169
-
Ser
GGA
[ENA]
¡û
>W2011536619
SCKM01000128
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L11 [SCKM]
2253
2166
-
Ser
GGA
[ENA]
¡û
>W2011536737
SCKP01000031
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
639
726
+
Ser
GGA
[ENA]
¡û
Identical group No.60187 (16 seq.)
>WENV181305059
OFIF01001270
[OFIF] marine metagenome; seawater
782
871
+
Ser
GGA
[ENA]
¡û
>WENV181305940
OFII01004719
[OFII] marine metagenome; seawater
479
390
-
Ser
GGA
[ENA]
¡û
>WENV181306267
OFIK01002116
[OFIK] marine metagenome; seawater
1231
1320
+
Ser
GGA
[ENA]
¡û
>WENV181310125
OFIZ01003348
[OFIZ] marine metagenome; seawater
1337
1426
+
Ser
GGA
[ENA]
¡û
>WENV181310761
OFJA01003835
[OFJA] marine metagenome; seawater
824
913
+
Ser
GGA
[ENA]
¡û
>WENV181312503
OFJC01001006
[OFJC] marine metagenome; seawater
1015
1104
+
Ser
GGA
[ENA]
¡û
>WENV181313038
OFJE01002629
[OFJE] marine metagenome; seawater
336
249
-
Ser
GGA
[ENA]
¡û
>WENV181314123
OFJJ01000815
[OFJJ] marine metagenome; seawater
1267
1178
-
Ser
GGA
[ENA]
¡û
>WENV181314885
OFJL01007437
[OFJL] marine metagenome; seawater
249
160
-
Ser
GGA
[ENA]
¡û
>WENV181316840
OFJV01011105
[OFJV] marine metagenome; seawater
223
134
-
Ser
GGA
[ENA]
¡û
>WENV181317476
OFJY01002312
[OFJY] marine metagenome; seawater
569
480
-
Ser
GGA
[ENA]
¡û
>WENV181318071
OFJZ01000383
[OFJZ] marine metagenome; seawater
3321
3232
-
Ser
GGA
[ENA]
¡û
>WENV181403545
OFUB01002159
[OFUB] marine metagenome; seawater
1425
1336
-
Ser
GGA
[ENA]
¡û
>W2011536627
SCKN01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L19 [SCKN]
112011
112100
+
Ser
GGA
[ENA]
¡û
>W2011536699
SCKO01000087
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
587
676
+
Ser
GGA
[ENA]
¡û
>WENV081383
ABEF01044986
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
1333
1424
+
Ser
GGA
[ENA]
Identical group No.60191 (3 seq.)
>WENV180061372
MPLX02220648
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
1355
1444
+
Ser
GGA
[ENA]
¡û
>WENV181317465
OFJY01002000
[OFJY] marine metagenome; seawater
1412
1499
+
Ser
GGA
[ENA]
¡û
>W2011411368
RDRY01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium PRS2 [RDRY]
1139
1226
+
Ser
GGA
[ENA]
¡û
Identical group No.114419 (1 seq.)
>W2011665743
SORU01000075
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
1263
1178
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK